Gene : AT1G44790 A. thaliana TAIR10
Defline:  (1 of 1) K07232 - cation transport protein ChaC (chaC) Genomic Order:  3679
Name:  ? AT1G44790 Secondary Identifier:  ? PAC:19650947
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G44790 0.5kb upstream 0.5kb upstream 2011 true Chr1: 16912154-16914164 Arabidopsis thaliana
AT1G44790 0.5kb upstream 0.5kb upstream 500 false Chr1: 16913665-16914164 Arabidopsis thaliana
AT1G44790 0.5kb downstream 0.5kb downstream 2011 true Chr1: 16911654-16913664 Arabidopsis thaliana
AT1G44790 0.5kb downstream 0.5kb downstream 500 false Chr1: 16911654-16912153 Arabidopsis thaliana
AT1G44790 1.0kb upstream 1.0kb upstream 2511 true Chr1: 16912154-16914664 Arabidopsis thaliana
AT1G44790 1.0kb upstream 1.0kb upstream 1000 false Chr1: 16913665-16914664 Arabidopsis thaliana
AT1G44790 1.0kb downstream 1.0kb downstream 2511 true Chr1: 16911154-16913664 Arabidopsis thaliana
AT1G44790 1.0kb downstream 1.0kb downstream 1000 false Chr1: 16911154-16912153 Arabidopsis thaliana
AT1G44790 2.0kb upstream 2.0kb upstream 3511 true Chr1: 16912154-16915664 Arabidopsis thaliana
AT1G44790 2.0kb upstream 2.0kb upstream 2000 false Chr1: 16913665-16915664 Arabidopsis thaliana
AT1G44790 2.0kb downstream 2.0kb downstream 3511 true Chr1: 16910154-16913664 Arabidopsis thaliana
AT1G44790 2.0kb downstream 2.0kb downstream 2000 false Chr1: 16910154-16912153 Arabidopsis thaliana
AT1G44790 5.0kb upstream 5.0kb upstream 6511 true Chr1: 16912154-16918664 Arabidopsis thaliana
AT1G44790 5.0kb upstream 5.0kb upstream 5000 false Chr1: 16913665-16918664 Arabidopsis thaliana
AT1G44790 5.0kb downstream 5.0kb downstream 6511 true Chr1: 16907154-16913664 Arabidopsis thaliana
AT1G44790 5.0kb downstream 5.0kb downstream 5000 false Chr1: 16907154-16912153 Arabidopsis thaliana
AT1G44790 10.0kb upstream 10.0kb upstream 11511 true Chr1: 16912154-16923664 Arabidopsis thaliana
AT1G44790 10.0kb upstream 10.0kb upstream 10000 false Chr1: 16913665-16923664 Arabidopsis thaliana
AT1G44790 10.0kb downstream 10.0kb downstream 11511 true Chr1: 16902154-16913664 Arabidopsis thaliana
AT1G44790 10.0kb downstream 10.0kb downstream 10000 false Chr1: 16902154-16912153 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368260 5261 Brassicaceae View MSA
123830002 5264 Brassicales-Malvales View MSA
124340312 5266 SBM View MSA
124241642 5268 Malvidae View MSA
124060758 5270 Rosid View MSA
123751581 5271 Pentapetalae View MSA
122789241 5272 Eudicot View MSA
122047820 5273 Angiosperm View MSA
121346610 5274 Embryophyte View MSA
123426702 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.328        
cufflinks 20.6        
cufflinks 23.186       High
cufflinks 20.437        
cufflinks 18.039        
cufflinks 16.692       Low

0 Strain