Gene : AT1G21380 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13856//PTHR13856:SF95 - VHS DOMAIN CONTAINING PROTEIN FAMILY // F24J8.3 PROTEIN Genomic Order:  2154
Name:  ? AT1G21380 Secondary Identifier:  ? PAC:19656939
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G21380 0.5kb upstream 0.5kb upstream 3578 true Chr1: 7485636-7489213 Arabidopsis thaliana
AT1G21380 0.5kb upstream 0.5kb upstream 500 false Chr1: 7488714-7489213 Arabidopsis thaliana
AT1G21380 0.5kb downstream 0.5kb downstream 3578 true Chr1: 7485136-7488713 Arabidopsis thaliana
AT1G21380 0.5kb downstream 0.5kb downstream 500 false Chr1: 7485136-7485635 Arabidopsis thaliana
AT1G21380 1.0kb upstream 1.0kb upstream 4078 true Chr1: 7485636-7489713 Arabidopsis thaliana
AT1G21380 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7488714-7489713 Arabidopsis thaliana
AT1G21380 1.0kb downstream 1.0kb downstream 4078 true Chr1: 7484636-7488713 Arabidopsis thaliana
AT1G21380 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7484636-7485635 Arabidopsis thaliana
AT1G21380 2.0kb upstream 2.0kb upstream 5078 true Chr1: 7485636-7490713 Arabidopsis thaliana
AT1G21380 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7488714-7490713 Arabidopsis thaliana
AT1G21380 2.0kb downstream 2.0kb downstream 5078 true Chr1: 7483636-7488713 Arabidopsis thaliana
AT1G21380 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7483636-7485635 Arabidopsis thaliana
AT1G21380 5.0kb upstream 5.0kb upstream 8078 true Chr1: 7485636-7493713 Arabidopsis thaliana
AT1G21380 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7488714-7493713 Arabidopsis thaliana
AT1G21380 5.0kb downstream 5.0kb downstream 8078 true Chr1: 7480636-7488713 Arabidopsis thaliana
AT1G21380 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7480636-7485635 Arabidopsis thaliana
AT1G21380 10.0kb upstream 10.0kb upstream 13078 true Chr1: 7485636-7498713 Arabidopsis thaliana
AT1G21380 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7488714-7498713 Arabidopsis thaliana
AT1G21380 10.0kb downstream 10.0kb downstream 13078 true Chr1: 7475636-7488713 Arabidopsis thaliana
AT1G21380 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7475636-7485635 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362983 5261 Brassicaceae View MSA
123832457 5264 Brassicales-Malvales View MSA
124344615 5266 SBM View MSA
124250197 5268 Malvidae View MSA
124064849 5270 Rosid View MSA
123740461 5271 Pentapetalae View MSA
122792029 5272 Eudicot View MSA
122045200 5273 Angiosperm View MSA
121349203 5274 Embryophyte View MSA
123427882 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.134        
cufflinks 38.613     High High
cufflinks 19.712       Low
cufflinks 32.622     High  
cufflinks 21.786        
cufflinks 38.828     High High

0 Strain