Gene : AT1G20580 A. thaliana TAIR10
Defline:  (1 of 2) K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Genomic Order:  2070
Name:  ? AT1G20580 Secondary Identifier:  ? PAC:19649742
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G20580 0.5kb upstream 0.5kb upstream 2259 true Chr1: 7128384-7130642 Arabidopsis thaliana
AT1G20580 0.5kb upstream 0.5kb upstream 500 false Chr1: 7128384-7128883 Arabidopsis thaliana
AT1G20580 0.5kb downstream 0.5kb downstream 2259 true Chr1: 7128884-7131142 Arabidopsis thaliana
AT1G20580 0.5kb downstream 0.5kb downstream 500 false Chr1: 7130643-7131142 Arabidopsis thaliana
AT1G20580 1.0kb upstream 1.0kb upstream 2759 true Chr1: 7127884-7130642 Arabidopsis thaliana
AT1G20580 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7127884-7128883 Arabidopsis thaliana
AT1G20580 1.0kb downstream 1.0kb downstream 2759 true Chr1: 7128884-7131642 Arabidopsis thaliana
AT1G20580 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7130643-7131642 Arabidopsis thaliana
AT1G20580 2.0kb upstream 2.0kb upstream 3759 true Chr1: 7126884-7130642 Arabidopsis thaliana
AT1G20580 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7126884-7128883 Arabidopsis thaliana
AT1G20580 2.0kb downstream 2.0kb downstream 3759 true Chr1: 7128884-7132642 Arabidopsis thaliana
AT1G20580 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7130643-7132642 Arabidopsis thaliana
AT1G20580 5.0kb upstream 5.0kb upstream 6759 true Chr1: 7123884-7130642 Arabidopsis thaliana
AT1G20580 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7123884-7128883 Arabidopsis thaliana
AT1G20580 5.0kb downstream 5.0kb downstream 6759 true Chr1: 7128884-7135642 Arabidopsis thaliana
AT1G20580 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7130643-7135642 Arabidopsis thaliana
AT1G20580 10.0kb upstream 10.0kb upstream 11759 true Chr1: 7118884-7130642 Arabidopsis thaliana
AT1G20580 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7118884-7128883 Arabidopsis thaliana
AT1G20580 10.0kb downstream 10.0kb downstream 11759 true Chr1: 7128884-7140642 Arabidopsis thaliana
AT1G20580 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7130643-7140642 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372891 5261 Brassicaceae View MSA
123838882 5264 Brassicales-Malvales View MSA
124338076 5266 SBM View MSA
124243625 5268 Malvidae View MSA
124071262 5270 Rosid View MSA
123746571 5271 Pentapetalae View MSA
122793733 5272 Eudicot View MSA
122047121 5273 Angiosperm View MSA
121348903 5274 Embryophyte View MSA
123424585 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.653        
cufflinks 24.272        
cufflinks 15.539        
cufflinks 24.449        
cufflinks 14.018       Low
cufflinks 25.525        

0 Strain