Gene : SYTB A. thaliana TAIR10
Primary Identifier:  ? AT1G20080 Defline:  (1 of 4) PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATED
Genomic Order:  2020 Name:  ? AT1G20080
Secondary Identifier:  ? PAC:19652904
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G20080 0.5kb upstream 0.5kb upstream 3414 true Chr1: 6961632-6965045 Arabidopsis thaliana
AT1G20080 0.5kb upstream 0.5kb upstream 500 false Chr1: 6961632-6962131 Arabidopsis thaliana
AT1G20080 0.5kb downstream 0.5kb downstream 3414 true Chr1: 6962132-6965545 Arabidopsis thaliana
AT1G20080 0.5kb downstream 0.5kb downstream 500 false Chr1: 6965046-6965545 Arabidopsis thaliana
AT1G20080 1.0kb upstream 1.0kb upstream 3914 true Chr1: 6961132-6965045 Arabidopsis thaliana
AT1G20080 1.0kb upstream 1.0kb upstream 1000 false Chr1: 6961132-6962131 Arabidopsis thaliana
AT1G20080 1.0kb downstream 1.0kb downstream 3914 true Chr1: 6962132-6966045 Arabidopsis thaliana
AT1G20080 1.0kb downstream 1.0kb downstream 1000 false Chr1: 6965046-6966045 Arabidopsis thaliana
AT1G20080 2.0kb upstream 2.0kb upstream 4914 true Chr1: 6960132-6965045 Arabidopsis thaliana
AT1G20080 2.0kb upstream 2.0kb upstream 2000 false Chr1: 6960132-6962131 Arabidopsis thaliana
AT1G20080 2.0kb downstream 2.0kb downstream 4914 true Chr1: 6962132-6967045 Arabidopsis thaliana
AT1G20080 2.0kb downstream 2.0kb downstream 2000 false Chr1: 6965046-6967045 Arabidopsis thaliana
AT1G20080 5.0kb upstream 5.0kb upstream 7914 true Chr1: 6957132-6965045 Arabidopsis thaliana
AT1G20080 5.0kb upstream 5.0kb upstream 5000 false Chr1: 6957132-6962131 Arabidopsis thaliana
AT1G20080 5.0kb downstream 5.0kb downstream 7914 true Chr1: 6962132-6970045 Arabidopsis thaliana
AT1G20080 5.0kb downstream 5.0kb downstream 5000 false Chr1: 6965046-6970045 Arabidopsis thaliana
AT1G20080 10.0kb upstream 10.0kb upstream 12914 true Chr1: 6952132-6965045 Arabidopsis thaliana
AT1G20080 10.0kb upstream 10.0kb upstream 10000 false Chr1: 6952132-6962131 Arabidopsis thaliana
AT1G20080 10.0kb downstream 10.0kb downstream 12914 true Chr1: 6962132-6975045 Arabidopsis thaliana
AT1G20080 10.0kb downstream 10.0kb downstream 10000 false Chr1: 6965046-6975045 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363678 5261 Brassicaceae View MSA
123831259 5264 Brassicales-Malvales View MSA
124350150 5266 SBM View MSA
124237503 5268 Malvidae View MSA
124069636 5270 Rosid View MSA
123744925 5271 Pentapetalae View MSA
122791810 5272 Eudicot View MSA
122043926 5273 Angiosperm View MSA
123429031 5275 Viridiplantae View MSA
121346982 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.157     Low  
cufflinks 0.146     Low  
cufflinks 0.047     Low Low
cufflinks 0.114     Low  
cufflinks 0.076     Low  
cufflinks 0.215     Low High

0 Strain