Gene : ACA1 A. thaliana TAIR10
Primary Identifier:  ? AT1G27770 Defline:  (1 of 2) PTHR24093//PTHR24093:SF262 - FAMILY NOT NAMED // CALCIUM-TRANSPORTING ATPASE 2, PLASMA MEMBRANE-TYPE-RELATED
Genomic Order:  2758 Name:  ? AT1G27770
Secondary Identifier:  ? PAC:19656002
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27770 0.5kb upstream 0.5kb upstream 5020 true Chr1: 9671638-9676657 Arabidopsis thaliana
AT1G27770 0.5kb upstream 0.5kb upstream 500 false Chr1: 9676158-9676657 Arabidopsis thaliana
AT1G27770 0.5kb downstream 0.5kb downstream 5020 true Chr1: 9671138-9676157 Arabidopsis thaliana
AT1G27770 0.5kb downstream 0.5kb downstream 500 false Chr1: 9671138-9671637 Arabidopsis thaliana
AT1G27770 1.0kb upstream 1.0kb upstream 5520 true Chr1: 9671638-9677157 Arabidopsis thaliana
AT1G27770 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9676158-9677157 Arabidopsis thaliana
AT1G27770 1.0kb downstream 1.0kb downstream 5520 true Chr1: 9670638-9676157 Arabidopsis thaliana
AT1G27770 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9670638-9671637 Arabidopsis thaliana
AT1G27770 2.0kb upstream 2.0kb upstream 6520 true Chr1: 9671638-9678157 Arabidopsis thaliana
AT1G27770 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9676158-9678157 Arabidopsis thaliana
AT1G27770 2.0kb downstream 2.0kb downstream 6520 true Chr1: 9669638-9676157 Arabidopsis thaliana
AT1G27770 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9669638-9671637 Arabidopsis thaliana
AT1G27770 5.0kb upstream 5.0kb upstream 9520 true Chr1: 9671638-9681157 Arabidopsis thaliana
AT1G27770 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9676158-9681157 Arabidopsis thaliana
AT1G27770 5.0kb downstream 5.0kb downstream 9520 true Chr1: 9666638-9676157 Arabidopsis thaliana
AT1G27770 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9666638-9671637 Arabidopsis thaliana
AT1G27770 10.0kb upstream 10.0kb upstream 14520 true Chr1: 9671638-9686157 Arabidopsis thaliana
AT1G27770 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9676158-9686157 Arabidopsis thaliana
AT1G27770 10.0kb downstream 10.0kb downstream 14520 true Chr1: 9661638-9676157 Arabidopsis thaliana
AT1G27770 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9661638-9671637 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364604 5261 Brassicaceae View MSA
123834708 5264 Brassicales-Malvales View MSA
124342075 5266 SBM View MSA
124238759 5268 Malvidae View MSA
124067452 5270 Rosid View MSA
123746765 5271 Pentapetalae View MSA
122788343 5272 Eudicot View MSA
122047165 5273 Angiosperm View MSA
121349207 5274 Embryophyte View MSA
123428805 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.71        
cufflinks 64.167     High High
cufflinks 14.702       Low
cufflinks 40.318     High  
cufflinks 13.452       Low
cufflinks 52.117     High  

0 Strain