Gene : AT1G27900 A. thaliana TAIR10
Defline:  (1 of 1) PTHR18934:SF131 - RNA HELICASE, PUTATIVE-RELATED Genomic Order:  2766
Name:  ? AT1G27900 Secondary Identifier:  ? PAC:19657985
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27900 0.5kb upstream 0.5kb upstream 5616 true Chr1: 9715453-9721068 Arabidopsis thaliana
AT1G27900 0.5kb upstream 0.5kb upstream 500 false Chr1: 9720569-9721068 Arabidopsis thaliana
AT1G27900 0.5kb downstream 0.5kb downstream 5616 true Chr1: 9714953-9720568 Arabidopsis thaliana
AT1G27900 0.5kb downstream 0.5kb downstream 500 false Chr1: 9714953-9715452 Arabidopsis thaliana
AT1G27900 1.0kb upstream 1.0kb upstream 6116 true Chr1: 9715453-9721568 Arabidopsis thaliana
AT1G27900 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9720569-9721568 Arabidopsis thaliana
AT1G27900 1.0kb downstream 1.0kb downstream 6116 true Chr1: 9714453-9720568 Arabidopsis thaliana
AT1G27900 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9714453-9715452 Arabidopsis thaliana
AT1G27900 2.0kb upstream 2.0kb upstream 7116 true Chr1: 9715453-9722568 Arabidopsis thaliana
AT1G27900 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9720569-9722568 Arabidopsis thaliana
AT1G27900 2.0kb downstream 2.0kb downstream 7116 true Chr1: 9713453-9720568 Arabidopsis thaliana
AT1G27900 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9713453-9715452 Arabidopsis thaliana
AT1G27900 5.0kb upstream 5.0kb upstream 10116 true Chr1: 9715453-9725568 Arabidopsis thaliana
AT1G27900 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9720569-9725568 Arabidopsis thaliana
AT1G27900 5.0kb downstream 5.0kb downstream 10116 true Chr1: 9710453-9720568 Arabidopsis thaliana
AT1G27900 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9710453-9715452 Arabidopsis thaliana
AT1G27900 10.0kb upstream 10.0kb upstream 15116 true Chr1: 9715453-9730568 Arabidopsis thaliana
AT1G27900 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9720569-9730568 Arabidopsis thaliana
AT1G27900 10.0kb downstream 10.0kb downstream 15116 true Chr1: 9705453-9720568 Arabidopsis thaliana
AT1G27900 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9705453-9715452 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366792 5261 Brassicaceae View MSA
123828865 5264 Brassicales-Malvales View MSA
124338391 5266 SBM View MSA
124241861 5268 Malvidae View MSA
124061640 5270 Rosid View MSA
123738238 5271 Pentapetalae View MSA
122791779 5272 Eudicot View MSA
122045278 5273 Angiosperm View MSA
121347414 5274 Embryophyte View MSA
123424380 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.217        
cufflinks 5.962        
cufflinks 4.685       Low
cufflinks 6.667       High
cufflinks 5.199        
cufflinks 6.217        

0 Strain