Gene : AT1G27940 A. thaliana TAIR10
Defline:  (1 of 2) PTHR24221//PTHR24221:SF235 - FAMILY NOT NAMED // ABC TRANSPORTER B FAMILY MEMBER 13-RELATED Genomic Order:  2770
Name:  ? AT1G27940 Secondary Identifier:  ? PAC:19649676
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27940 0.5kb upstream 0.5kb upstream 5033 true Chr1: 9733597-9738629 Arabidopsis thaliana
AT1G27940 0.5kb upstream 0.5kb upstream 500 false Chr1: 9738130-9738629 Arabidopsis thaliana
AT1G27940 0.5kb downstream 0.5kb downstream 5033 true Chr1: 9733097-9738129 Arabidopsis thaliana
AT1G27940 0.5kb downstream 0.5kb downstream 500 false Chr1: 9733097-9733596 Arabidopsis thaliana
AT1G27940 1.0kb upstream 1.0kb upstream 5533 true Chr1: 9733597-9739129 Arabidopsis thaliana
AT1G27940 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9738130-9739129 Arabidopsis thaliana
AT1G27940 1.0kb downstream 1.0kb downstream 5533 true Chr1: 9732597-9738129 Arabidopsis thaliana
AT1G27940 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9732597-9733596 Arabidopsis thaliana
AT1G27940 2.0kb upstream 2.0kb upstream 6533 true Chr1: 9733597-9740129 Arabidopsis thaliana
AT1G27940 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9738130-9740129 Arabidopsis thaliana
AT1G27940 2.0kb downstream 2.0kb downstream 6533 true Chr1: 9731597-9738129 Arabidopsis thaliana
AT1G27940 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9731597-9733596 Arabidopsis thaliana
AT1G27940 5.0kb upstream 5.0kb upstream 9533 true Chr1: 9733597-9743129 Arabidopsis thaliana
AT1G27940 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9738130-9743129 Arabidopsis thaliana
AT1G27940 5.0kb downstream 5.0kb downstream 9533 true Chr1: 9728597-9738129 Arabidopsis thaliana
AT1G27940 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9728597-9733596 Arabidopsis thaliana
AT1G27940 10.0kb upstream 10.0kb upstream 14533 true Chr1: 9733597-9748129 Arabidopsis thaliana
AT1G27940 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9738130-9748129 Arabidopsis thaliana
AT1G27940 10.0kb downstream 10.0kb downstream 14533 true Chr1: 9723597-9738129 Arabidopsis thaliana
AT1G27940 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9723597-9733596 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376360 5261 Brassicaceae View MSA
123838012 5264 Brassicales-Malvales View MSA
124345264 5266 SBM View MSA
124243125 5268 Malvidae View MSA
124068120 5270 Rosid View MSA
123742106 5271 Pentapetalae View MSA
122796466 5272 Eudicot View MSA
122044866 5273 Angiosperm View MSA
123429075 5275 Viridiplantae View MSA
121350880 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.13       High
cufflinks 0.01     Low  
cufflinks 0.315        
cufflinks 0.007     Low Low
cufflinks 0.469        
cufflinks 0.024     Low  

0 Strain