Gene : AT1G27045 A. thaliana TAIR10
Defline:  (1 of 2) PTHR24326:SF136 - HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54-RELATED Genomic Order:  2678
Name:  ? AT1G27045 Secondary Identifier:  ? PAC:19655144
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27045 0.5kb upstream 0.5kb upstream 1911 true Chr1: 9391109-9393019 Arabidopsis thaliana
AT1G27045 0.5kb upstream 0.5kb upstream 500 false Chr1: 9391109-9391608 Arabidopsis thaliana
AT1G27045 0.5kb downstream 0.5kb downstream 1911 true Chr1: 9391609-9393519 Arabidopsis thaliana
AT1G27045 0.5kb downstream 0.5kb downstream 500 false Chr1: 9393020-9393519 Arabidopsis thaliana
AT1G27045 1.0kb upstream 1.0kb upstream 2411 true Chr1: 9390609-9393019 Arabidopsis thaliana
AT1G27045 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9390609-9391608 Arabidopsis thaliana
AT1G27045 1.0kb downstream 1.0kb downstream 2411 true Chr1: 9391609-9394019 Arabidopsis thaliana
AT1G27045 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9393020-9394019 Arabidopsis thaliana
AT1G27045 2.0kb upstream 2.0kb upstream 3411 true Chr1: 9389609-9393019 Arabidopsis thaliana
AT1G27045 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9389609-9391608 Arabidopsis thaliana
AT1G27045 2.0kb downstream 2.0kb downstream 3411 true Chr1: 9391609-9395019 Arabidopsis thaliana
AT1G27045 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9393020-9395019 Arabidopsis thaliana
AT1G27045 5.0kb upstream 5.0kb upstream 6411 true Chr1: 9386609-9393019 Arabidopsis thaliana
AT1G27045 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9386609-9391608 Arabidopsis thaliana
AT1G27045 5.0kb downstream 5.0kb downstream 6411 true Chr1: 9391609-9398019 Arabidopsis thaliana
AT1G27045 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9393020-9398019 Arabidopsis thaliana
AT1G27045 10.0kb upstream 10.0kb upstream 11411 true Chr1: 9381609-9393019 Arabidopsis thaliana
AT1G27045 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9381609-9391608 Arabidopsis thaliana
AT1G27045 10.0kb downstream 10.0kb downstream 11411 true Chr1: 9391609-9403019 Arabidopsis thaliana
AT1G27045 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9393020-9403019 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375323 5261 Brassicaceae View MSA
123800927 5264 Brassicales-Malvales View MSA
124298282 5266 SBM View MSA
124149961 5268 Malvidae View MSA
124070886 5270 Rosid View MSA
123751160 5271 Pentapetalae View MSA
122797641 5272 Eudicot View MSA
122048587 5273 Angiosperm View MSA
121351579 5274 Embryophyte View MSA
123382235 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.169     Low  
cufflinks 0.247     Low  
cufflinks 0.446        
cufflinks 0.077     Low Low
cufflinks 0.714       High
cufflinks 0.092     Low  

0 Strain