Gene : AT1G25360 A. thaliana TAIR10
Defline:  (1 of 61) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2544
Name:  ? AT1G25360 Secondary Identifier:  ? PAC:19658253
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G25360 0.5kb upstream 0.5kb upstream 2873 true Chr1: 8893928-8896800 Arabidopsis thaliana
AT1G25360 0.5kb upstream 0.5kb upstream 500 false Chr1: 8893928-8894427 Arabidopsis thaliana
AT1G25360 0.5kb downstream 0.5kb downstream 2873 true Chr1: 8894428-8897300 Arabidopsis thaliana
AT1G25360 0.5kb downstream 0.5kb downstream 500 false Chr1: 8896801-8897300 Arabidopsis thaliana
AT1G25360 1.0kb upstream 1.0kb upstream 3373 true Chr1: 8893428-8896800 Arabidopsis thaliana
AT1G25360 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8893428-8894427 Arabidopsis thaliana
AT1G25360 1.0kb downstream 1.0kb downstream 3373 true Chr1: 8894428-8897800 Arabidopsis thaliana
AT1G25360 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8896801-8897800 Arabidopsis thaliana
AT1G25360 2.0kb upstream 2.0kb upstream 4373 true Chr1: 8892428-8896800 Arabidopsis thaliana
AT1G25360 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8892428-8894427 Arabidopsis thaliana
AT1G25360 2.0kb downstream 2.0kb downstream 4373 true Chr1: 8894428-8898800 Arabidopsis thaliana
AT1G25360 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8896801-8898800 Arabidopsis thaliana
AT1G25360 5.0kb upstream 5.0kb upstream 7373 true Chr1: 8889428-8896800 Arabidopsis thaliana
AT1G25360 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8889428-8894427 Arabidopsis thaliana
AT1G25360 5.0kb downstream 5.0kb downstream 7373 true Chr1: 8894428-8901800 Arabidopsis thaliana
AT1G25360 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8896801-8901800 Arabidopsis thaliana
AT1G25360 10.0kb upstream 10.0kb upstream 12373 true Chr1: 8884428-8896800 Arabidopsis thaliana
AT1G25360 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8884428-8894427 Arabidopsis thaliana
AT1G25360 10.0kb downstream 10.0kb downstream 12373 true Chr1: 8894428-8906800 Arabidopsis thaliana
AT1G25360 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8896801-8906800 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026493 5273 Angiosperm View MSA
122361229 5261 Brassicaceae View MSA
123827951 5264 Brassicales-Malvales View MSA
124345101 5266 SBM View MSA
124238628 5268 Malvidae View MSA
124068457 5270 Rosid View MSA
123738065 5271 Pentapetalae View MSA
122785849 5272 Eudicot View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.262        
cufflinks 1.386        
cufflinks 0.79       Low
cufflinks 1.732        
cufflinks 0.716       Low
cufflinks 1.698        

0 Strain