Gene : NCED5 A. thaliana TAIR10
Primary Identifier:  ? AT1G30100 Defline:  (1 of 2) PTHR10543:SF42 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED2, CHLOROPLASTIC-RELATED
Genomic Order:  2978 Name:  ? AT1G30100
Secondary Identifier:  ? PAC:19656582
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-695 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G30100 0.5kb upstream 0.5kb upstream 2526 true Chr1: 10570840-10573365 Arabidopsis thaliana
AT1G30100 0.5kb upstream 0.5kb upstream 500 false Chr1: 10570840-10571339 Arabidopsis thaliana
AT1G30100 0.5kb downstream 0.5kb downstream 2526 true Chr1: 10571340-10573865 Arabidopsis thaliana
AT1G30100 0.5kb downstream 0.5kb downstream 500 false Chr1: 10573366-10573865 Arabidopsis thaliana
AT1G30100 1.0kb upstream 1.0kb upstream 3026 true Chr1: 10570340-10573365 Arabidopsis thaliana
AT1G30100 1.0kb upstream 1.0kb upstream 1000 false Chr1: 10570340-10571339 Arabidopsis thaliana
AT1G30100 1.0kb downstream 1.0kb downstream 3026 true Chr1: 10571340-10574365 Arabidopsis thaliana
AT1G30100 1.0kb downstream 1.0kb downstream 1000 false Chr1: 10573366-10574365 Arabidopsis thaliana
AT1G30100 2.0kb upstream 2.0kb upstream 4026 true Chr1: 10569340-10573365 Arabidopsis thaliana
AT1G30100 2.0kb upstream 2.0kb upstream 2000 false Chr1: 10569340-10571339 Arabidopsis thaliana
AT1G30100 2.0kb downstream 2.0kb downstream 4026 true Chr1: 10571340-10575365 Arabidopsis thaliana
AT1G30100 2.0kb downstream 2.0kb downstream 2000 false Chr1: 10573366-10575365 Arabidopsis thaliana
AT1G30100 5.0kb upstream 5.0kb upstream 7026 true Chr1: 10566340-10573365 Arabidopsis thaliana
AT1G30100 5.0kb upstream 5.0kb upstream 5000 false Chr1: 10566340-10571339 Arabidopsis thaliana
AT1G30100 5.0kb downstream 5.0kb downstream 7026 true Chr1: 10571340-10578365 Arabidopsis thaliana
AT1G30100 5.0kb downstream 5.0kb downstream 5000 false Chr1: 10573366-10578365 Arabidopsis thaliana
AT1G30100 10.0kb upstream 10.0kb upstream 12026 true Chr1: 10561340-10573365 Arabidopsis thaliana
AT1G30100 10.0kb upstream 10.0kb upstream 10000 false Chr1: 10561340-10571339 Arabidopsis thaliana
AT1G30100 10.0kb downstream 10.0kb downstream 12026 true Chr1: 10571340-10583365 Arabidopsis thaliana
AT1G30100 10.0kb downstream 10.0kb downstream 10000 false Chr1: 10573366-10583365 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372061 5261 Brassicaceae View MSA
123836894 5264 Brassicales-Malvales View MSA
124346886 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.267     Low High
cufflinks 0.015     Low Low
cufflinks 0.11     Low  
cufflinks 0.121     Low  
cufflinks 0.12     Low  
cufflinks 0.032     Low  

0 Strain