Gene : AT1G64260 A. thaliana TAIR10
Defline:  (1 of 3) PTHR31973//PTHR31973:SF4 - FAMILY NOT NAMED // MUDR FAMILY TRANSPOSASE Genomic Order:  5346
Name:  ? AT1G64260 Secondary Identifier:  ? PAC:19654037
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G64260 0.5kb upstream 0.5kb upstream 2660 true Chr1: 23847256-23849915 Arabidopsis thaliana
AT1G64260 0.5kb upstream 0.5kb upstream 500 false Chr1: 23847256-23847755 Arabidopsis thaliana
AT1G64260 0.5kb downstream 0.5kb downstream 2660 true Chr1: 23847756-23850415 Arabidopsis thaliana
AT1G64260 0.5kb downstream 0.5kb downstream 500 false Chr1: 23849916-23850415 Arabidopsis thaliana
AT1G64260 1.0kb upstream 1.0kb upstream 3160 true Chr1: 23846756-23849915 Arabidopsis thaliana
AT1G64260 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23846756-23847755 Arabidopsis thaliana
AT1G64260 1.0kb downstream 1.0kb downstream 3160 true Chr1: 23847756-23850915 Arabidopsis thaliana
AT1G64260 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23849916-23850915 Arabidopsis thaliana
AT1G64260 2.0kb upstream 2.0kb upstream 4160 true Chr1: 23845756-23849915 Arabidopsis thaliana
AT1G64260 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23845756-23847755 Arabidopsis thaliana
AT1G64260 2.0kb downstream 2.0kb downstream 4160 true Chr1: 23847756-23851915 Arabidopsis thaliana
AT1G64260 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23849916-23851915 Arabidopsis thaliana
AT1G64260 5.0kb upstream 5.0kb upstream 7160 true Chr1: 23842756-23849915 Arabidopsis thaliana
AT1G64260 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23842756-23847755 Arabidopsis thaliana
AT1G64260 5.0kb downstream 5.0kb downstream 7160 true Chr1: 23847756-23854915 Arabidopsis thaliana
AT1G64260 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23849916-23854915 Arabidopsis thaliana
AT1G64260 10.0kb upstream 10.0kb upstream 12160 true Chr1: 23837756-23849915 Arabidopsis thaliana
AT1G64260 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23837756-23847755 Arabidopsis thaliana
AT1G64260 10.0kb downstream 10.0kb downstream 12160 true Chr1: 23847756-23859915 Arabidopsis thaliana
AT1G64260 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23849916-23859915 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328723 5261 Brassicaceae Singleton cluster - no MSA
123836717 5264 Brassicales-Malvales View MSA
124346447 5266 SBM View MSA
124250884 5268 Malvidae View MSA
124072231 5270 Rosid View MSA
123753345 5271 Pentapetalae View MSA
122797917 5272 Eudicot View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.385        
cufflinks 1.057        
cufflinks 0.183     Low Low
cufflinks 0.874        
cufflinks 0.218     Low Low
cufflinks 1.112        

0 Strain