Gene : AT1G62930 A. thaliana TAIR10
Defline:  (1 of 12) PTHR24015//PTHR24015:SF884 - FAMILY NOT NAMED // PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN Genomic Order:  5201
Name:  ? AT1G62930 Secondary Identifier:  ? PAC:19653124
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G62930 0.5kb upstream 0.5kb upstream 2650 true Chr1: 23306034-23308683 Arabidopsis thaliana
AT1G62930 0.5kb upstream 0.5kb upstream 500 false Chr1: 23306034-23306533 Arabidopsis thaliana
AT1G62930 0.5kb downstream 0.5kb downstream 2650 true Chr1: 23306534-23309183 Arabidopsis thaliana
AT1G62930 0.5kb downstream 0.5kb downstream 500 false Chr1: 23308684-23309183 Arabidopsis thaliana
AT1G62930 1.0kb upstream 1.0kb upstream 3150 true Chr1: 23305534-23308683 Arabidopsis thaliana
AT1G62930 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23305534-23306533 Arabidopsis thaliana
AT1G62930 1.0kb downstream 1.0kb downstream 3150 true Chr1: 23306534-23309683 Arabidopsis thaliana
AT1G62930 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23308684-23309683 Arabidopsis thaliana
AT1G62930 2.0kb upstream 2.0kb upstream 4150 true Chr1: 23304534-23308683 Arabidopsis thaliana
AT1G62930 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23304534-23306533 Arabidopsis thaliana
AT1G62930 2.0kb downstream 2.0kb downstream 4150 true Chr1: 23306534-23310683 Arabidopsis thaliana
AT1G62930 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23308684-23310683 Arabidopsis thaliana
AT1G62930 5.0kb upstream 5.0kb upstream 7150 true Chr1: 23301534-23308683 Arabidopsis thaliana
AT1G62930 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23301534-23306533 Arabidopsis thaliana
AT1G62930 5.0kb downstream 5.0kb downstream 7150 true Chr1: 23306534-23313683 Arabidopsis thaliana
AT1G62930 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23308684-23313683 Arabidopsis thaliana
AT1G62930 10.0kb upstream 10.0kb upstream 12150 true Chr1: 23296534-23308683 Arabidopsis thaliana
AT1G62930 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23296534-23306533 Arabidopsis thaliana
AT1G62930 10.0kb downstream 10.0kb downstream 12150 true Chr1: 23306534-23318683 Arabidopsis thaliana
AT1G62930 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23308684-23318683 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378647 5261 Brassicaceae View MSA
123841436 5264 Brassicales-Malvales View MSA
124350672 5266 SBM View MSA
124254642 5268 Malvidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.222        
cufflinks 1.867        
cufflinks 1.747        
cufflinks 2.005        
cufflinks 1.556       Low
cufflinks 2.483       High

0 Strain