Gene : ATG8C A. thaliana TAIR10
Primary Identifier:  ? AT1G62040 Defline:  (1 of 4) PTHR10969:SF43 - AUTOPHAGY-RELATED PROTEIN 8A-RELATED
Genomic Order:  5109 Name:  ? AT1G62040
Secondary Identifier:  ? PAC:19657433
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G62040 0.5kb upstream 0.5kb upstream 2290 true Chr1: 22932260-22934549 Arabidopsis thaliana
AT1G62040 0.5kb upstream 0.5kb upstream 500 false Chr1: 22932260-22932759 Arabidopsis thaliana
AT1G62040 0.5kb downstream 0.5kb downstream 2290 true Chr1: 22932760-22935049 Arabidopsis thaliana
AT1G62040 0.5kb downstream 0.5kb downstream 500 false Chr1: 22934550-22935049 Arabidopsis thaliana
AT1G62040 1.0kb upstream 1.0kb upstream 2790 true Chr1: 22931760-22934549 Arabidopsis thaliana
AT1G62040 1.0kb upstream 1.0kb upstream 1000 false Chr1: 22931760-22932759 Arabidopsis thaliana
AT1G62040 1.0kb downstream 1.0kb downstream 2790 true Chr1: 22932760-22935549 Arabidopsis thaliana
AT1G62040 1.0kb downstream 1.0kb downstream 1000 false Chr1: 22934550-22935549 Arabidopsis thaliana
AT1G62040 2.0kb upstream 2.0kb upstream 3790 true Chr1: 22930760-22934549 Arabidopsis thaliana
AT1G62040 2.0kb upstream 2.0kb upstream 2000 false Chr1: 22930760-22932759 Arabidopsis thaliana
AT1G62040 2.0kb downstream 2.0kb downstream 3790 true Chr1: 22932760-22936549 Arabidopsis thaliana
AT1G62040 2.0kb downstream 2.0kb downstream 2000 false Chr1: 22934550-22936549 Arabidopsis thaliana
AT1G62040 5.0kb upstream 5.0kb upstream 6790 true Chr1: 22927760-22934549 Arabidopsis thaliana
AT1G62040 5.0kb upstream 5.0kb upstream 5000 false Chr1: 22927760-22932759 Arabidopsis thaliana
AT1G62040 5.0kb downstream 5.0kb downstream 6790 true Chr1: 22932760-22939549 Arabidopsis thaliana
AT1G62040 5.0kb downstream 5.0kb downstream 5000 false Chr1: 22934550-22939549 Arabidopsis thaliana
AT1G62040 10.0kb upstream 10.0kb upstream 11790 true Chr1: 22922760-22934549 Arabidopsis thaliana
AT1G62040 10.0kb upstream 10.0kb upstream 10000 false Chr1: 22922760-22932759 Arabidopsis thaliana
AT1G62040 10.0kb downstream 10.0kb downstream 11790 true Chr1: 22932760-22944549 Arabidopsis thaliana
AT1G62040 10.0kb downstream 10.0kb downstream 10000 false Chr1: 22934550-22944549 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041244 5273 Angiosperm View MSA
122376693 5261 Brassicaceae View MSA
123839416 5264 Brassicales-Malvales View MSA
124338752 5266 SBM View MSA
124253964 5268 Malvidae View MSA
124069314 5270 Rosid View MSA
123741745 5271 Pentapetalae View MSA
122788161 5272 Eudicot View MSA
121349541 5274 Embryophyte View MSA
123427174 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.038        
cufflinks 9.748       High
cufflinks 8.313       Low
cufflinks 9.37        
cufflinks 9.048        
cufflinks 8.231       Low

0 Strain