Gene : AT1G62020 A. thaliana TAIR10
Defline:  (1 of 2) K05236 - coatomer protein complex, subunit alpha (xenin) (COPA) Genomic Order:  5107
Name:  ? AT1G62020 Secondary Identifier:  ? PAC:19655486
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G62020 0.5kb upstream 0.5kb upstream 4991 true Chr1: 22919034-22924024 Arabidopsis thaliana
AT1G62020 0.5kb upstream 0.5kb upstream 500 false Chr1: 22919034-22919533 Arabidopsis thaliana
AT1G62020 0.5kb downstream 0.5kb downstream 4991 true Chr1: 22919534-22924524 Arabidopsis thaliana
AT1G62020 0.5kb downstream 0.5kb downstream 500 false Chr1: 22924025-22924524 Arabidopsis thaliana
AT1G62020 1.0kb upstream 1.0kb upstream 5491 true Chr1: 22918534-22924024 Arabidopsis thaliana
AT1G62020 1.0kb upstream 1.0kb upstream 1000 false Chr1: 22918534-22919533 Arabidopsis thaliana
AT1G62020 1.0kb downstream 1.0kb downstream 5491 true Chr1: 22919534-22925024 Arabidopsis thaliana
AT1G62020 1.0kb downstream 1.0kb downstream 1000 false Chr1: 22924025-22925024 Arabidopsis thaliana
AT1G62020 2.0kb upstream 2.0kb upstream 6491 true Chr1: 22917534-22924024 Arabidopsis thaliana
AT1G62020 2.0kb upstream 2.0kb upstream 2000 false Chr1: 22917534-22919533 Arabidopsis thaliana
AT1G62020 2.0kb downstream 2.0kb downstream 6491 true Chr1: 22919534-22926024 Arabidopsis thaliana
AT1G62020 2.0kb downstream 2.0kb downstream 2000 false Chr1: 22924025-22926024 Arabidopsis thaliana
AT1G62020 5.0kb upstream 5.0kb upstream 9491 true Chr1: 22914534-22924024 Arabidopsis thaliana
AT1G62020 5.0kb upstream 5.0kb upstream 5000 false Chr1: 22914534-22919533 Arabidopsis thaliana
AT1G62020 5.0kb downstream 5.0kb downstream 9491 true Chr1: 22919534-22929024 Arabidopsis thaliana
AT1G62020 5.0kb downstream 5.0kb downstream 5000 false Chr1: 22924025-22929024 Arabidopsis thaliana
AT1G62020 10.0kb upstream 10.0kb upstream 14491 true Chr1: 22909534-22924024 Arabidopsis thaliana
AT1G62020 10.0kb upstream 10.0kb upstream 10000 false Chr1: 22909534-22919533 Arabidopsis thaliana
AT1G62020 10.0kb downstream 10.0kb downstream 14491 true Chr1: 22919534-22934024 Arabidopsis thaliana
AT1G62020 10.0kb downstream 10.0kb downstream 10000 false Chr1: 22924025-22934024 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378022 5261 Brassicaceae View MSA
123841029 5264 Brassicales-Malvales View MSA
124337320 5266 SBM View MSA
124243842 5268 Malvidae View MSA
124068022 5270 Rosid View MSA
123750852 5271 Pentapetalae View MSA
122787725 5272 Eudicot View MSA
122046406 5273 Angiosperm View MSA
121345159 5274 Embryophyte View MSA
123428224 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.284        
cufflinks 30.142     High  
cufflinks 18.116       Low
cufflinks 33.991     High  
cufflinks 19.106        
cufflinks 38.869     High High

0 Strain