Gene : AMY3 A. thaliana TAIR10
Primary Identifier:  ? AT1G69830 Defline:  (1 of 1) PTHR10357:SF171 - ALPHA-AMYLASE 3, CHLOROPLASTIC
Genomic Order:  5943 Name:  ? AT1G69830
Secondary Identifier:  ? PAC:19656168
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G69830 0.5kb upstream 0.5kb upstream 5276 true Chr1: 26288278-26293553 Arabidopsis thaliana
AT1G69830 0.5kb upstream 0.5kb upstream 500 false Chr1: 26293054-26293553 Arabidopsis thaliana
AT1G69830 0.5kb downstream 0.5kb downstream 5276 true Chr1: 26287778-26293053 Arabidopsis thaliana
AT1G69830 0.5kb downstream 0.5kb downstream 500 false Chr1: 26287778-26288277 Arabidopsis thaliana
AT1G69830 1.0kb upstream 1.0kb upstream 5776 true Chr1: 26288278-26294053 Arabidopsis thaliana
AT1G69830 1.0kb upstream 1.0kb upstream 1000 false Chr1: 26293054-26294053 Arabidopsis thaliana
AT1G69830 1.0kb downstream 1.0kb downstream 5776 true Chr1: 26287278-26293053 Arabidopsis thaliana
AT1G69830 1.0kb downstream 1.0kb downstream 1000 false Chr1: 26287278-26288277 Arabidopsis thaliana
AT1G69830 2.0kb upstream 2.0kb upstream 6776 true Chr1: 26288278-26295053 Arabidopsis thaliana
AT1G69830 2.0kb upstream 2.0kb upstream 2000 false Chr1: 26293054-26295053 Arabidopsis thaliana
AT1G69830 2.0kb downstream 2.0kb downstream 6776 true Chr1: 26286278-26293053 Arabidopsis thaliana
AT1G69830 2.0kb downstream 2.0kb downstream 2000 false Chr1: 26286278-26288277 Arabidopsis thaliana
AT1G69830 5.0kb upstream 5.0kb upstream 9776 true Chr1: 26288278-26298053 Arabidopsis thaliana
AT1G69830 5.0kb upstream 5.0kb upstream 5000 false Chr1: 26293054-26298053 Arabidopsis thaliana
AT1G69830 5.0kb downstream 5.0kb downstream 9776 true Chr1: 26283278-26293053 Arabidopsis thaliana
AT1G69830 5.0kb downstream 5.0kb downstream 5000 false Chr1: 26283278-26288277 Arabidopsis thaliana
AT1G69830 10.0kb upstream 10.0kb upstream 14776 true Chr1: 26288278-26303053 Arabidopsis thaliana
AT1G69830 10.0kb upstream 10.0kb upstream 10000 false Chr1: 26293054-26303053 Arabidopsis thaliana
AT1G69830 10.0kb downstream 10.0kb downstream 14776 true Chr1: 26278278-26293053 Arabidopsis thaliana
AT1G69830 10.0kb downstream 10.0kb downstream 10000 false Chr1: 26278278-26288277 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041096 5273 Angiosperm View MSA
122364998 5261 Brassicaceae View MSA
123830540 5264 Brassicales-Malvales View MSA
124338703 5266 SBM View MSA
124243652 5268 Malvidae View MSA
124067208 5270 Rosid View MSA
123738092 5271 Pentapetalae View MSA
122789264 5272 Eudicot View MSA
121348688 5274 Embryophyte View MSA
123427521 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 67.189     High  
cufflinks 28.436        
cufflinks 82.892     High High
cufflinks 23.598        
cufflinks 79.052     High  
cufflinks 22.174       Low

0 Strain