Gene : AT1G53490 A. thaliana TAIR10
Defline:  (1 of 1) K10639 - E3 ubiquitin-protein ligase CCNP1IP1 [EC:6.3.2.19] (CCNB1IP1, HEI10) Genomic Order:  4390
Name:  ? AT1G53490 Secondary Identifier:  ? PAC:19653647
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53490 0.5kb upstream 0.5kb upstream 4186 true Chr1: 19962767-19966952 Arabidopsis thaliana
AT1G53490 0.5kb upstream 0.5kb upstream 500 false Chr1: 19962767-19963266 Arabidopsis thaliana
AT1G53490 0.5kb downstream 0.5kb downstream 4186 true Chr1: 19963267-19967452 Arabidopsis thaliana
AT1G53490 0.5kb downstream 0.5kb downstream 500 false Chr1: 19966953-19967452 Arabidopsis thaliana
AT1G53490 1.0kb upstream 1.0kb upstream 4686 true Chr1: 19962267-19966952 Arabidopsis thaliana
AT1G53490 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19962267-19963266 Arabidopsis thaliana
AT1G53490 1.0kb downstream 1.0kb downstream 4686 true Chr1: 19963267-19967952 Arabidopsis thaliana
AT1G53490 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19966953-19967952 Arabidopsis thaliana
AT1G53490 2.0kb upstream 2.0kb upstream 5686 true Chr1: 19961267-19966952 Arabidopsis thaliana
AT1G53490 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19961267-19963266 Arabidopsis thaliana
AT1G53490 2.0kb downstream 2.0kb downstream 5686 true Chr1: 19963267-19968952 Arabidopsis thaliana
AT1G53490 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19966953-19968952 Arabidopsis thaliana
AT1G53490 5.0kb upstream 5.0kb upstream 8686 true Chr1: 19958267-19966952 Arabidopsis thaliana
AT1G53490 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19958267-19963266 Arabidopsis thaliana
AT1G53490 5.0kb downstream 5.0kb downstream 8686 true Chr1: 19963267-19971952 Arabidopsis thaliana
AT1G53490 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19966953-19971952 Arabidopsis thaliana
AT1G53490 10.0kb upstream 10.0kb upstream 13686 true Chr1: 19953267-19966952 Arabidopsis thaliana
AT1G53490 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19953267-19963266 Arabidopsis thaliana
AT1G53490 10.0kb downstream 10.0kb downstream 13686 true Chr1: 19963267-19976952 Arabidopsis thaliana
AT1G53490 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19966953-19976952 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374970 5261 Brassicaceae View MSA
123828578 5264 Brassicales-Malvales View MSA
124336858 5266 SBM View MSA
124243042 5268 Malvidae View MSA
124065183 5270 Rosid View MSA
123752158 5271 Pentapetalae View MSA
122786923 5272 Eudicot View MSA
122042121 5273 Angiosperm View MSA
121345385 5274 Embryophyte View MSA
123428682 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.275     Low  
cufflinks 0.694        
cufflinks 0.187     Low Low
cufflinks 0.865       High
cufflinks 0.248        
cufflinks 0.603        

0 Strain