Gene : PAP5 A. thaliana TAIR10
Primary Identifier:  ? AT1G52940 Defline:  (1 of 5) PTHR22953:SF47 - PURPLE ACID PHOSPHATASE 11-RELATED
Genomic Order:  4328 Name:  ? AT1G52940
Secondary Identifier:  ? PAC:19658243
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5083 Arabidopsis thaliana pathologic  
Athaliana PWY-6348 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52940 0.5kb upstream 0.5kb upstream 7824 true Chr1: 19715902-19723725 Arabidopsis thaliana
AT1G52940 0.5kb upstream 0.5kb upstream 500 false Chr1: 19715902-19716401 Arabidopsis thaliana
AT1G52940 0.5kb downstream 0.5kb downstream 7824 true Chr1: 19716402-19724225 Arabidopsis thaliana
AT1G52940 0.5kb downstream 0.5kb downstream 500 false Chr1: 19723726-19724225 Arabidopsis thaliana
AT1G52940 1.0kb upstream 1.0kb upstream 8324 true Chr1: 19715402-19723725 Arabidopsis thaliana
AT1G52940 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19715402-19716401 Arabidopsis thaliana
AT1G52940 1.0kb downstream 1.0kb downstream 8324 true Chr1: 19716402-19724725 Arabidopsis thaliana
AT1G52940 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19723726-19724725 Arabidopsis thaliana
AT1G52940 2.0kb upstream 2.0kb upstream 9324 true Chr1: 19714402-19723725 Arabidopsis thaliana
AT1G52940 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19714402-19716401 Arabidopsis thaliana
AT1G52940 2.0kb downstream 2.0kb downstream 9324 true Chr1: 19716402-19725725 Arabidopsis thaliana
AT1G52940 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19723726-19725725 Arabidopsis thaliana
AT1G52940 5.0kb upstream 5.0kb upstream 12324 true Chr1: 19711402-19723725 Arabidopsis thaliana
AT1G52940 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19711402-19716401 Arabidopsis thaliana
AT1G52940 5.0kb downstream 5.0kb downstream 12324 true Chr1: 19716402-19728725 Arabidopsis thaliana
AT1G52940 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19723726-19728725 Arabidopsis thaliana
AT1G52940 10.0kb upstream 10.0kb upstream 17324 true Chr1: 19706402-19723725 Arabidopsis thaliana
AT1G52940 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19706402-19716401 Arabidopsis thaliana
AT1G52940 10.0kb downstream 10.0kb downstream 17324 true Chr1: 19716402-19733725 Arabidopsis thaliana
AT1G52940 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19723726-19733725 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367372 5261 Brassicaceae View MSA
123799340 5264 Brassicales-Malvales View MSA
124349813 5266 SBM View MSA
124244573 5268 Malvidae View MSA
123951986 5270 Rosid View MSA
123737494 5271 Pentapetalae View MSA
122792847 5272 Eudicot View MSA
122050360 5273 Angiosperm View MSA
121351600 5274 Embryophyte View MSA
123426131 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain