Gene : AT1G52680 A. thaliana TAIR10
Defline:  (1 of 2) PTHR34191:SF3 - F6D8.10-RELATED Genomic Order:  4299
Name:  ? AT1G52680 Secondary Identifier:  ? PAC:19656772
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLUCONEO-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-7115 Arabidopsis thaliana pathologic  

Genomics

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Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52680 0.5kb upstream 0.5kb upstream 1379 true Chr1: 19618143-19619521 Arabidopsis thaliana
AT1G52680 0.5kb upstream 0.5kb upstream 500 false Chr1: 19619022-19619521 Arabidopsis thaliana
AT1G52680 0.5kb downstream 0.5kb downstream 1379 true Chr1: 19617643-19619021 Arabidopsis thaliana
AT1G52680 0.5kb downstream 0.5kb downstream 500 false Chr1: 19617643-19618142 Arabidopsis thaliana
AT1G52680 1.0kb upstream 1.0kb upstream 1879 true Chr1: 19618143-19620021 Arabidopsis thaliana
AT1G52680 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19619022-19620021 Arabidopsis thaliana
AT1G52680 1.0kb downstream 1.0kb downstream 1879 true Chr1: 19617143-19619021 Arabidopsis thaliana
AT1G52680 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19617143-19618142 Arabidopsis thaliana
AT1G52680 2.0kb upstream 2.0kb upstream 2879 true Chr1: 19618143-19621021 Arabidopsis thaliana
AT1G52680 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19619022-19621021 Arabidopsis thaliana
AT1G52680 2.0kb downstream 2.0kb downstream 2879 true Chr1: 19616143-19619021 Arabidopsis thaliana
AT1G52680 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19616143-19618142 Arabidopsis thaliana
AT1G52680 5.0kb upstream 5.0kb upstream 5879 true Chr1: 19618143-19624021 Arabidopsis thaliana
AT1G52680 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19619022-19624021 Arabidopsis thaliana
AT1G52680 5.0kb downstream 5.0kb downstream 5879 true Chr1: 19613143-19619021 Arabidopsis thaliana
AT1G52680 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19613143-19618142 Arabidopsis thaliana
AT1G52680 10.0kb upstream 10.0kb upstream 10879 true Chr1: 19618143-19629021 Arabidopsis thaliana
AT1G52680 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19619022-19629021 Arabidopsis thaliana
AT1G52680 10.0kb downstream 10.0kb downstream 10879 true Chr1: 19608143-19619021 Arabidopsis thaliana
AT1G52680 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19608143-19618142 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377335 5261 Brassicaceae View MSA
123837740 5264 Brassicales-Malvales View MSA
124322348 5266 SBM View MSA
124248303 5268 Malvidae View MSA
124063227 5270 Rosid View MSA
123749202 5271 Pentapetalae View MSA
122796678 5272 Eudicot View MSA
122050999 5273 Angiosperm View MSA
121350297 5274 Embryophyte View MSA
123428296 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.114     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low  

0 Strain