Gene : AT1G52430 A. thaliana TAIR10
Defline:  (1 of 13) PTHR22975:SF9 - F6D8.33-RELATED Genomic Order:  4274
Name:  ? AT1G52430 Secondary Identifier:  ? PAC:19650582
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52430 0.5kb upstream 0.5kb upstream 5106 true Chr1: 19531350-19536455 Arabidopsis thaliana
AT1G52430 0.5kb upstream 0.5kb upstream 500 false Chr1: 19535956-19536455 Arabidopsis thaliana
AT1G52430 0.5kb downstream 0.5kb downstream 5106 true Chr1: 19530850-19535955 Arabidopsis thaliana
AT1G52430 0.5kb downstream 0.5kb downstream 500 false Chr1: 19530850-19531349 Arabidopsis thaliana
AT1G52430 1.0kb upstream 1.0kb upstream 5606 true Chr1: 19531350-19536955 Arabidopsis thaliana
AT1G52430 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19535956-19536955 Arabidopsis thaliana
AT1G52430 1.0kb downstream 1.0kb downstream 5606 true Chr1: 19530350-19535955 Arabidopsis thaliana
AT1G52430 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19530350-19531349 Arabidopsis thaliana
AT1G52430 2.0kb upstream 2.0kb upstream 6606 true Chr1: 19531350-19537955 Arabidopsis thaliana
AT1G52430 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19535956-19537955 Arabidopsis thaliana
AT1G52430 2.0kb downstream 2.0kb downstream 6606 true Chr1: 19529350-19535955 Arabidopsis thaliana
AT1G52430 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19529350-19531349 Arabidopsis thaliana
AT1G52430 5.0kb upstream 5.0kb upstream 9606 true Chr1: 19531350-19540955 Arabidopsis thaliana
AT1G52430 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19535956-19540955 Arabidopsis thaliana
AT1G52430 5.0kb downstream 5.0kb downstream 9606 true Chr1: 19526350-19535955 Arabidopsis thaliana
AT1G52430 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19526350-19531349 Arabidopsis thaliana
AT1G52430 10.0kb upstream 10.0kb upstream 14606 true Chr1: 19531350-19545955 Arabidopsis thaliana
AT1G52430 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19535956-19545955 Arabidopsis thaliana
AT1G52430 10.0kb downstream 10.0kb downstream 14606 true Chr1: 19521350-19535955 Arabidopsis thaliana
AT1G52430 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19521350-19531349 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380506 5261 Brassicaceae View MSA
123802750 5264 Brassicales-Malvales View MSA
124299918 5266 SBM View MSA
124252136 5268 Malvidae View MSA
124072872 5270 Rosid View MSA
123749894 5271 Pentapetalae View MSA
122797305 5272 Eudicot View MSA
122047573 5273 Angiosperm View MSA
121346745 5274 Embryophyte View MSA
123380438 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.212     Low  
cufflinks 0.381       High
cufflinks 0.193     Low  
cufflinks 0.311     Low  
cufflinks 0.167     Low Low
cufflinks 0.343        

0 Strain