Gene : SCL3 A. thaliana TAIR10
Primary Identifier:  ? AT1G50420 Defline:  (1 of 34) PF03514 - GRAS domain family (GRAS)
Genomic Order:  4064 Name:  ? AT1G50420
Secondary Identifier:  ? PAC:19657283
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50420 0.5kb upstream 0.5kb upstream 2692 true Chr1: 18677926-18680617 Arabidopsis thaliana
AT1G50420 0.5kb upstream 0.5kb upstream 500 false Chr1: 18680118-18680617 Arabidopsis thaliana
AT1G50420 0.5kb downstream 0.5kb downstream 2692 true Chr1: 18677426-18680117 Arabidopsis thaliana
AT1G50420 0.5kb downstream 0.5kb downstream 500 false Chr1: 18677426-18677925 Arabidopsis thaliana
AT1G50420 1.0kb upstream 1.0kb upstream 3192 true Chr1: 18677926-18681117 Arabidopsis thaliana
AT1G50420 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18680118-18681117 Arabidopsis thaliana
AT1G50420 1.0kb downstream 1.0kb downstream 3192 true Chr1: 18676926-18680117 Arabidopsis thaliana
AT1G50420 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18676926-18677925 Arabidopsis thaliana
AT1G50420 2.0kb upstream 2.0kb upstream 4192 true Chr1: 18677926-18682117 Arabidopsis thaliana
AT1G50420 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18680118-18682117 Arabidopsis thaliana
AT1G50420 2.0kb downstream 2.0kb downstream 4192 true Chr1: 18675926-18680117 Arabidopsis thaliana
AT1G50420 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18675926-18677925 Arabidopsis thaliana
AT1G50420 5.0kb upstream 5.0kb upstream 7192 true Chr1: 18677926-18685117 Arabidopsis thaliana
AT1G50420 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18680118-18685117 Arabidopsis thaliana
AT1G50420 5.0kb downstream 5.0kb downstream 7192 true Chr1: 18672926-18680117 Arabidopsis thaliana
AT1G50420 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18672926-18677925 Arabidopsis thaliana
AT1G50420 10.0kb upstream 10.0kb upstream 12192 true Chr1: 18677926-18690117 Arabidopsis thaliana
AT1G50420 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18680118-18690117 Arabidopsis thaliana
AT1G50420 10.0kb downstream 10.0kb downstream 12192 true Chr1: 18667926-18680117 Arabidopsis thaliana
AT1G50420 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18667926-18677925 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378672 5261 Brassicaceae View MSA
123840903 5264 Brassicales-Malvales View MSA
124350903 5266 SBM View MSA
124245523 5268 Malvidae View MSA
124071733 5270 Rosid View MSA
123743380 5271 Pentapetalae View MSA
122791329 5272 Eudicot View MSA
122043320 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.435        
cufflinks 6.175        
cufflinks 5.03        
cufflinks 9.307       High
cufflinks 5.541        
cufflinks 6.121        

0 Strain