Gene : AT1G49890 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31807:SF4 - PROTEIN SNOWY COTYLEDON 3-RELATED Genomic Order:  4015
Name:  ? AT1G49890 Secondary Identifier:  ? PAC:19656135
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49890 0.5kb upstream 0.5kb upstream 4249 true Chr1: 18469575-18473823 Arabidopsis thaliana
AT1G49890 0.5kb upstream 0.5kb upstream 500 false Chr1: 18469575-18470074 Arabidopsis thaliana
AT1G49890 0.5kb downstream 0.5kb downstream 4249 true Chr1: 18470075-18474323 Arabidopsis thaliana
AT1G49890 0.5kb downstream 0.5kb downstream 500 false Chr1: 18473824-18474323 Arabidopsis thaliana
AT1G49890 1.0kb upstream 1.0kb upstream 4749 true Chr1: 18469075-18473823 Arabidopsis thaliana
AT1G49890 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18469075-18470074 Arabidopsis thaliana
AT1G49890 1.0kb downstream 1.0kb downstream 4749 true Chr1: 18470075-18474823 Arabidopsis thaliana
AT1G49890 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18473824-18474823 Arabidopsis thaliana
AT1G49890 2.0kb upstream 2.0kb upstream 5749 true Chr1: 18468075-18473823 Arabidopsis thaliana
AT1G49890 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18468075-18470074 Arabidopsis thaliana
AT1G49890 2.0kb downstream 2.0kb downstream 5749 true Chr1: 18470075-18475823 Arabidopsis thaliana
AT1G49890 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18473824-18475823 Arabidopsis thaliana
AT1G49890 5.0kb upstream 5.0kb upstream 8749 true Chr1: 18465075-18473823 Arabidopsis thaliana
AT1G49890 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18465075-18470074 Arabidopsis thaliana
AT1G49890 5.0kb downstream 5.0kb downstream 8749 true Chr1: 18470075-18478823 Arabidopsis thaliana
AT1G49890 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18473824-18478823 Arabidopsis thaliana
AT1G49890 10.0kb upstream 10.0kb upstream 13749 true Chr1: 18460075-18473823 Arabidopsis thaliana
AT1G49890 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18460075-18470074 Arabidopsis thaliana
AT1G49890 10.0kb downstream 10.0kb downstream 13749 true Chr1: 18470075-18483823 Arabidopsis thaliana
AT1G49890 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18473824-18483823 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364663 5261 Brassicaceae View MSA
123829280 5264 Brassicales-Malvales View MSA
124338118 5266 SBM View MSA
124254505 5268 Malvidae View MSA
124065184 5270 Rosid View MSA
123747124 5271 Pentapetalae View MSA
122796341 5272 Eudicot View MSA
122044458 5273 Angiosperm View MSA
121348675 5274 Embryophyte View MSA
123426167 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.98        
cufflinks 4.799       Low
cufflinks 5.409        
cufflinks 6.728       High
cufflinks 5.198        
cufflinks 5.502        

0 Strain