Gene : AT1G56080 A. thaliana TAIR10
Genomic Order:  4669 Name:  ? AT1G56080
Secondary Identifier:  ? PAC:19649805
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G56080 0.5kb upstream 0.5kb upstream 2631 true Chr1: 20974161-20976791 Arabidopsis thaliana
AT1G56080 0.5kb upstream 0.5kb upstream 500 false Chr1: 20976292-20976791 Arabidopsis thaliana
AT1G56080 0.5kb downstream 0.5kb downstream 2631 true Chr1: 20973661-20976291 Arabidopsis thaliana
AT1G56080 0.5kb downstream 0.5kb downstream 500 false Chr1: 20973661-20974160 Arabidopsis thaliana
AT1G56080 1.0kb upstream 1.0kb upstream 3131 true Chr1: 20974161-20977291 Arabidopsis thaliana
AT1G56080 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20976292-20977291 Arabidopsis thaliana
AT1G56080 1.0kb downstream 1.0kb downstream 3131 true Chr1: 20973161-20976291 Arabidopsis thaliana
AT1G56080 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20973161-20974160 Arabidopsis thaliana
AT1G56080 2.0kb upstream 2.0kb upstream 4131 true Chr1: 20974161-20978291 Arabidopsis thaliana
AT1G56080 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20976292-20978291 Arabidopsis thaliana
AT1G56080 2.0kb downstream 2.0kb downstream 4131 true Chr1: 20972161-20976291 Arabidopsis thaliana
AT1G56080 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20972161-20974160 Arabidopsis thaliana
AT1G56080 5.0kb upstream 5.0kb upstream 7131 true Chr1: 20974161-20981291 Arabidopsis thaliana
AT1G56080 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20976292-20981291 Arabidopsis thaliana
AT1G56080 5.0kb downstream 5.0kb downstream 7131 true Chr1: 20969161-20976291 Arabidopsis thaliana
AT1G56080 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20969161-20974160 Arabidopsis thaliana
AT1G56080 10.0kb upstream 10.0kb upstream 12131 true Chr1: 20974161-20986291 Arabidopsis thaliana
AT1G56080 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20976292-20986291 Arabidopsis thaliana
AT1G56080 10.0kb downstream 10.0kb downstream 12131 true Chr1: 20964161-20976291 Arabidopsis thaliana
AT1G56080 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20964161-20974160 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041257 5273 Angiosperm View MSA
122373520 5261 Brassicaceae View MSA
123800569 5264 Brassicales-Malvales View MSA
124297971 5266 SBM View MSA
124149726 5268 Malvidae View MSA
123875476 5270 Rosid View MSA
123459290 5271 Pentapetalae View MSA
122494684 5272 Eudicot View MSA
121349608 5274 Embryophyte View MSA
123425538 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.206        
cufflinks 4.167       High
cufflinks 0.713       Low
cufflinks 3.46        
cufflinks 0.678       Low
cufflinks 3.621        

0 Strain