Gene : AT1G55790 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11538//PTHR11538:SF43//PTHR22814//PTHR22814:SF34 - PHENYLALANYL-TRNA SYNTHETASE // SUBFAMILY NOT NAMED // COPPER TRANSPORT PROTEIN ATOX1-RELATED // COPPER TRANSPORT PROTEIN-RELATED Genomic Order:  4636
Name:  ? AT1G55790 Secondary Identifier:  ? PAC:19657167
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55790 0.5kb upstream 0.5kb upstream 4299 true Chr1: 20852324-20856622 Arabidopsis thaliana
AT1G55790 0.5kb upstream 0.5kb upstream 500 false Chr1: 20856123-20856622 Arabidopsis thaliana
AT1G55790 0.5kb downstream 0.5kb downstream 4299 true Chr1: 20851824-20856122 Arabidopsis thaliana
AT1G55790 0.5kb downstream 0.5kb downstream 500 false Chr1: 20851824-20852323 Arabidopsis thaliana
AT1G55790 1.0kb upstream 1.0kb upstream 4799 true Chr1: 20852324-20857122 Arabidopsis thaliana
AT1G55790 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20856123-20857122 Arabidopsis thaliana
AT1G55790 1.0kb downstream 1.0kb downstream 4799 true Chr1: 20851324-20856122 Arabidopsis thaliana
AT1G55790 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20851324-20852323 Arabidopsis thaliana
AT1G55790 2.0kb upstream 2.0kb upstream 5799 true Chr1: 20852324-20858122 Arabidopsis thaliana
AT1G55790 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20856123-20858122 Arabidopsis thaliana
AT1G55790 2.0kb downstream 2.0kb downstream 5799 true Chr1: 20850324-20856122 Arabidopsis thaliana
AT1G55790 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20850324-20852323 Arabidopsis thaliana
AT1G55790 5.0kb upstream 5.0kb upstream 8799 true Chr1: 20852324-20861122 Arabidopsis thaliana
AT1G55790 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20856123-20861122 Arabidopsis thaliana
AT1G55790 5.0kb downstream 5.0kb downstream 8799 true Chr1: 20847324-20856122 Arabidopsis thaliana
AT1G55790 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20847324-20852323 Arabidopsis thaliana
AT1G55790 10.0kb upstream 10.0kb upstream 13799 true Chr1: 20852324-20866122 Arabidopsis thaliana
AT1G55790 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20856123-20866122 Arabidopsis thaliana
AT1G55790 10.0kb downstream 10.0kb downstream 13799 true Chr1: 20842324-20856122 Arabidopsis thaliana
AT1G55790 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20842324-20852323 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029703 5273 Angiosperm View MSA
122379357 5261 Brassicaceae View MSA
123802225 5264 Brassicales-Malvales View MSA
124299437 5266 SBM View MSA
124250474 5268 Malvidae View MSA
124074900 5270 Rosid View MSA
123750465 5271 Pentapetalae View MSA
122797518 5272 Eudicot View MSA
121349631 5274 Embryophyte View MSA
123425246 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.305        
cufflinks 0.684        
cufflinks 0.036     Low Low
cufflinks 1.541       High
cufflinks 0.105     Low  
cufflinks 0.717        

0 Strain