Gene : AT1G54890 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31656//PTHR31656:SF5 - FAMILY NOT NAMED // LATE EMBRYOGENESIS ABUNDANT-RELATED PROTEIN Genomic Order:  4540
Name:  ? AT1G54890 Secondary Identifier:  ? PAC:19651041
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54890 0.5kb upstream 0.5kb upstream 1888 true Chr1: 20462583-20464470 Arabidopsis thaliana
AT1G54890 0.5kb upstream 0.5kb upstream 500 false Chr1: 20462583-20463082 Arabidopsis thaliana
AT1G54890 0.5kb downstream 0.5kb downstream 1888 true Chr1: 20463083-20464970 Arabidopsis thaliana
AT1G54890 0.5kb downstream 0.5kb downstream 500 false Chr1: 20464471-20464970 Arabidopsis thaliana
AT1G54890 1.0kb upstream 1.0kb upstream 2388 true Chr1: 20462083-20464470 Arabidopsis thaliana
AT1G54890 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20462083-20463082 Arabidopsis thaliana
AT1G54890 1.0kb downstream 1.0kb downstream 2388 true Chr1: 20463083-20465470 Arabidopsis thaliana
AT1G54890 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20464471-20465470 Arabidopsis thaliana
AT1G54890 2.0kb upstream 2.0kb upstream 3388 true Chr1: 20461083-20464470 Arabidopsis thaliana
AT1G54890 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20461083-20463082 Arabidopsis thaliana
AT1G54890 2.0kb downstream 2.0kb downstream 3388 true Chr1: 20463083-20466470 Arabidopsis thaliana
AT1G54890 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20464471-20466470 Arabidopsis thaliana
AT1G54890 5.0kb upstream 5.0kb upstream 6388 true Chr1: 20458083-20464470 Arabidopsis thaliana
AT1G54890 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20458083-20463082 Arabidopsis thaliana
AT1G54890 5.0kb downstream 5.0kb downstream 6388 true Chr1: 20463083-20469470 Arabidopsis thaliana
AT1G54890 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20464471-20469470 Arabidopsis thaliana
AT1G54890 10.0kb upstream 10.0kb upstream 11388 true Chr1: 20453083-20464470 Arabidopsis thaliana
AT1G54890 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20453083-20463082 Arabidopsis thaliana
AT1G54890 10.0kb downstream 10.0kb downstream 11388 true Chr1: 20463083-20474470 Arabidopsis thaliana
AT1G54890 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20464471-20474470 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375318 5261 Brassicaceae View MSA
123840871 5264 Brassicales-Malvales View MSA
124348251 5266 SBM View MSA
124246310 5268 Malvidae View MSA
124073376 5270 Rosid View MSA
123752203 5271 Pentapetalae View MSA
122797654 5272 Eudicot View MSA
122050447 5273 Angiosperm View MSA
121349873 5274 Embryophyte View MSA
123381481 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.031     Low Low
cufflinks 0.481        
cufflinks 0.093     Low  
cufflinks 1.116       High
cufflinks 0.024     Low Low
cufflinks 0.505        

0 Strain