Gene : AT1G54350 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11384:SF3 - INNER MEMBRANE ABC TRANSPORTER ATP-BINDING PROTEIN YDDA-RELATED Genomic Order:  4490
Name:  ? AT1G54350 Secondary Identifier:  ? PAC:19651828
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54350 0.5kb upstream 0.5kb upstream 4020 true Chr1: 20286382-20290401 Arabidopsis thaliana
AT1G54350 0.5kb upstream 0.5kb upstream 500 false Chr1: 20286382-20286881 Arabidopsis thaliana
AT1G54350 0.5kb downstream 0.5kb downstream 4020 true Chr1: 20286882-20290901 Arabidopsis thaliana
AT1G54350 0.5kb downstream 0.5kb downstream 500 false Chr1: 20290402-20290901 Arabidopsis thaliana
AT1G54350 1.0kb upstream 1.0kb upstream 4520 true Chr1: 20285882-20290401 Arabidopsis thaliana
AT1G54350 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20285882-20286881 Arabidopsis thaliana
AT1G54350 1.0kb downstream 1.0kb downstream 4520 true Chr1: 20286882-20291401 Arabidopsis thaliana
AT1G54350 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20290402-20291401 Arabidopsis thaliana
AT1G54350 2.0kb upstream 2.0kb upstream 5520 true Chr1: 20284882-20290401 Arabidopsis thaliana
AT1G54350 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20284882-20286881 Arabidopsis thaliana
AT1G54350 2.0kb downstream 2.0kb downstream 5520 true Chr1: 20286882-20292401 Arabidopsis thaliana
AT1G54350 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20290402-20292401 Arabidopsis thaliana
AT1G54350 5.0kb upstream 5.0kb upstream 8520 true Chr1: 20281882-20290401 Arabidopsis thaliana
AT1G54350 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20281882-20286881 Arabidopsis thaliana
AT1G54350 5.0kb downstream 5.0kb downstream 8520 true Chr1: 20286882-20295401 Arabidopsis thaliana
AT1G54350 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20290402-20295401 Arabidopsis thaliana
AT1G54350 10.0kb upstream 10.0kb upstream 13520 true Chr1: 20276882-20290401 Arabidopsis thaliana
AT1G54350 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20276882-20286881 Arabidopsis thaliana
AT1G54350 10.0kb downstream 10.0kb downstream 13520 true Chr1: 20286882-20300401 Arabidopsis thaliana
AT1G54350 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20290402-20300401 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367365 5261 Brassicaceae View MSA
123828632 5264 Brassicales-Malvales View MSA
124338730 5266 SBM View MSA
124243708 5268 Malvidae View MSA
124064537 5270 Rosid View MSA
123737763 5271 Pentapetalae View MSA
122786409 5272 Eudicot View MSA
122041976 5273 Angiosperm View MSA
121349377 5274 Embryophyte View MSA
123427476 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.768        
cufflinks 7.578        
cufflinks 28.098     High High
cufflinks 5.887        
cufflinks 23.419        
cufflinks 4.667       Low

0 Strain