Gene : CID3 A. thaliana TAIR10
Primary Identifier:  ? AT1G54170 Defline:  (1 of 4) PTHR12854 - ATAXIN 2-RELATED
Genomic Order:  4471 Name:  ? AT1G54170
Secondary Identifier:  ? PAC:19655982
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54170 0.5kb upstream 0.5kb upstream 5389 true Chr1: 20221060-20226448 Arabidopsis thaliana
AT1G54170 0.5kb upstream 0.5kb upstream 500 false Chr1: 20225949-20226448 Arabidopsis thaliana
AT1G54170 0.5kb downstream 0.5kb downstream 5389 true Chr1: 20220560-20225948 Arabidopsis thaliana
AT1G54170 0.5kb downstream 0.5kb downstream 500 false Chr1: 20220560-20221059 Arabidopsis thaliana
AT1G54170 1.0kb upstream 1.0kb upstream 5889 true Chr1: 20221060-20226948 Arabidopsis thaliana
AT1G54170 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20225949-20226948 Arabidopsis thaliana
AT1G54170 1.0kb downstream 1.0kb downstream 5889 true Chr1: 20220060-20225948 Arabidopsis thaliana
AT1G54170 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20220060-20221059 Arabidopsis thaliana
AT1G54170 2.0kb upstream 2.0kb upstream 6889 true Chr1: 20221060-20227948 Arabidopsis thaliana
AT1G54170 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20225949-20227948 Arabidopsis thaliana
AT1G54170 2.0kb downstream 2.0kb downstream 6889 true Chr1: 20219060-20225948 Arabidopsis thaliana
AT1G54170 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20219060-20221059 Arabidopsis thaliana
AT1G54170 5.0kb upstream 5.0kb upstream 9889 true Chr1: 20221060-20230948 Arabidopsis thaliana
AT1G54170 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20225949-20230948 Arabidopsis thaliana
AT1G54170 5.0kb downstream 5.0kb downstream 9889 true Chr1: 20216060-20225948 Arabidopsis thaliana
AT1G54170 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20216060-20221059 Arabidopsis thaliana
AT1G54170 10.0kb upstream 10.0kb upstream 14889 true Chr1: 20221060-20235948 Arabidopsis thaliana
AT1G54170 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20225949-20235948 Arabidopsis thaliana
AT1G54170 10.0kb downstream 10.0kb downstream 14889 true Chr1: 20211060-20225948 Arabidopsis thaliana
AT1G54170 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20211060-20221059 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370253 5261 Brassicaceae View MSA
123836951 5264 Brassicales-Malvales View MSA
124350030 5266 SBM View MSA
124239870 5268 Malvidae View MSA
124063578 5270 Rosid View MSA
123743281 5271 Pentapetalae View MSA
122790252 5272 Eudicot View MSA
122049882 5273 Angiosperm View MSA
121348132 5274 Embryophyte View MSA
123427801 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.041        
cufflinks 10.925        
cufflinks 6.138       Low
cufflinks 12.343       High
cufflinks 6.631       Low
cufflinks 11.447        

0 Strain