Gene : AT1G02460 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  156
Name:  ? AT1G02460 Secondary Identifier:  ? PAC:19657482
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G02460 0.5kb upstream 0.5kb upstream 3032 true Chr1: 504673-507704 Arabidopsis thaliana
AT1G02460 0.5kb upstream 0.5kb upstream 500 false Chr1: 507205-507704 Arabidopsis thaliana
AT1G02460 0.5kb downstream 0.5kb downstream 3032 true Chr1: 504173-507204 Arabidopsis thaliana
AT1G02460 0.5kb downstream 0.5kb downstream 500 false Chr1: 504173-504672 Arabidopsis thaliana
AT1G02460 1.0kb upstream 1.0kb upstream 3532 true Chr1: 504673-508204 Arabidopsis thaliana
AT1G02460 1.0kb upstream 1.0kb upstream 1000 false Chr1: 507205-508204 Arabidopsis thaliana
AT1G02460 1.0kb downstream 1.0kb downstream 3532 true Chr1: 503673-507204 Arabidopsis thaliana
AT1G02460 1.0kb downstream 1.0kb downstream 1000 false Chr1: 503673-504672 Arabidopsis thaliana
AT1G02460 2.0kb upstream 2.0kb upstream 4532 true Chr1: 504673-509204 Arabidopsis thaliana
AT1G02460 2.0kb upstream 2.0kb upstream 2000 false Chr1: 507205-509204 Arabidopsis thaliana
AT1G02460 2.0kb downstream 2.0kb downstream 4532 true Chr1: 502673-507204 Arabidopsis thaliana
AT1G02460 2.0kb downstream 2.0kb downstream 2000 false Chr1: 502673-504672 Arabidopsis thaliana
AT1G02460 5.0kb upstream 5.0kb upstream 7532 true Chr1: 504673-512204 Arabidopsis thaliana
AT1G02460 5.0kb upstream 5.0kb upstream 5000 false Chr1: 507205-512204 Arabidopsis thaliana
AT1G02460 5.0kb downstream 5.0kb downstream 7532 true Chr1: 499673-507204 Arabidopsis thaliana
AT1G02460 5.0kb downstream 5.0kb downstream 5000 false Chr1: 499673-504672 Arabidopsis thaliana
AT1G02460 10.0kb upstream 10.0kb upstream 12532 true Chr1: 504673-517204 Arabidopsis thaliana
AT1G02460 10.0kb upstream 10.0kb upstream 10000 false Chr1: 507205-517204 Arabidopsis thaliana
AT1G02460 10.0kb downstream 10.0kb downstream 12532 true Chr1: 494673-507204 Arabidopsis thaliana
AT1G02460 10.0kb downstream 10.0kb downstream 10000 false Chr1: 494673-504672 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376062 5261 Brassicaceae View MSA
123841630 5264 Brassicales-Malvales View MSA
124345370 5266 SBM View MSA
124249445 5268 Malvidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.409       Low
cufflinks 9.434       High
cufflinks 0.869        
cufflinks 7.444        
cufflinks 1.099        
cufflinks 5.848        

0 Strain