Gene : AT1G80960 A. thaliana TAIR10
Defline:  (1 of 17) PTHR32153//PTHR32153:SF2 - FAMILY NOT NAMED // F-BOX/LRR-REPEAT PROTEIN 25-RELATED Genomic Order:  7075
Name:  ? AT1G80960 Secondary Identifier:  ? PAC:19650990
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80960 0.5kb upstream 0.5kb upstream 2987 true Chr1: 30415337-30418323 Arabidopsis thaliana
AT1G80960 0.5kb upstream 0.5kb upstream 500 false Chr1: 30415337-30415836 Arabidopsis thaliana
AT1G80960 0.5kb downstream 0.5kb downstream 2987 true Chr1: 30415837-30418823 Arabidopsis thaliana
AT1G80960 0.5kb downstream 0.5kb downstream 500 false Chr1: 30418324-30418823 Arabidopsis thaliana
AT1G80960 1.0kb upstream 1.0kb upstream 3487 true Chr1: 30414837-30418323 Arabidopsis thaliana
AT1G80960 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30414837-30415836 Arabidopsis thaliana
AT1G80960 1.0kb downstream 1.0kb downstream 3487 true Chr1: 30415837-30419323 Arabidopsis thaliana
AT1G80960 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30418324-30419323 Arabidopsis thaliana
AT1G80960 2.0kb upstream 2.0kb upstream 4487 true Chr1: 30413837-30418323 Arabidopsis thaliana
AT1G80960 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30413837-30415836 Arabidopsis thaliana
AT1G80960 2.0kb downstream 2.0kb downstream 4487 true Chr1: 30415837-30420323 Arabidopsis thaliana
AT1G80960 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30418324-30420323 Arabidopsis thaliana
AT1G80960 5.0kb upstream 5.0kb upstream 7487 true Chr1: 30410837-30418323 Arabidopsis thaliana
AT1G80960 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30410837-30415836 Arabidopsis thaliana
AT1G80960 5.0kb downstream 5.0kb downstream 7487 true Chr1: 30415837-30423323 Arabidopsis thaliana
AT1G80960 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30418324-30423323 Arabidopsis thaliana
AT1G80960 10.0kb upstream 10.0kb upstream 12487 true Chr1: 30405837-30418323 Arabidopsis thaliana
AT1G80960 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30405837-30415836 Arabidopsis thaliana
AT1G80960 10.0kb downstream 10.0kb downstream 11835 true Chr1: 30415837-30427671 Arabidopsis thaliana
AT1G80960 10.0kb downstream 10.0kb downstream 9348 false Chr1: 30418324-30427671 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378541 5261 Brassicaceae View MSA
123837353 5264 Brassicales-Malvales View MSA
124322292 5266 SBM View MSA
124254039 5268 Malvidae View MSA
124073024 5270 Rosid View MSA
123753592 5271 Pentapetalae View MSA
122797964 5272 Eudicot View MSA
122050940 5273 Angiosperm View MSA
121351679 5274 Embryophyte View MSA
123382274 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.972        
cufflinks 1.295       High
cufflinks 1.121        
cufflinks 1.017        
cufflinks 1.21        
cufflinks 0.931       Low

0 Strain