Gene : PPR596 A. thaliana TAIR10
Primary Identifier:  ? AT1G80270 Defline:  (1 of 367) PF01535 - PPR repeat (PPR)
Genomic Order:  7004 Name:  ? AT1G80270
Secondary Identifier:  ? PAC:19654877
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80270 0.5kb upstream 0.5kb upstream 3054 true Chr1: 30180454-30183507 Arabidopsis thaliana
AT1G80270 0.5kb upstream 0.5kb upstream 500 false Chr1: 30180454-30180953 Arabidopsis thaliana
AT1G80270 0.5kb downstream 0.5kb downstream 3054 true Chr1: 30180954-30184007 Arabidopsis thaliana
AT1G80270 0.5kb downstream 0.5kb downstream 500 false Chr1: 30183508-30184007 Arabidopsis thaliana
AT1G80270 1.0kb upstream 1.0kb upstream 3554 true Chr1: 30179954-30183507 Arabidopsis thaliana
AT1G80270 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30179954-30180953 Arabidopsis thaliana
AT1G80270 1.0kb downstream 1.0kb downstream 3554 true Chr1: 30180954-30184507 Arabidopsis thaliana
AT1G80270 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30183508-30184507 Arabidopsis thaliana
AT1G80270 2.0kb upstream 2.0kb upstream 4554 true Chr1: 30178954-30183507 Arabidopsis thaliana
AT1G80270 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30178954-30180953 Arabidopsis thaliana
AT1G80270 2.0kb downstream 2.0kb downstream 4554 true Chr1: 30180954-30185507 Arabidopsis thaliana
AT1G80270 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30183508-30185507 Arabidopsis thaliana
AT1G80270 5.0kb upstream 5.0kb upstream 7554 true Chr1: 30175954-30183507 Arabidopsis thaliana
AT1G80270 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30175954-30180953 Arabidopsis thaliana
AT1G80270 5.0kb downstream 5.0kb downstream 7554 true Chr1: 30180954-30188507 Arabidopsis thaliana
AT1G80270 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30183508-30188507 Arabidopsis thaliana
AT1G80270 10.0kb upstream 10.0kb upstream 12554 true Chr1: 30170954-30183507 Arabidopsis thaliana
AT1G80270 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30170954-30180953 Arabidopsis thaliana
AT1G80270 10.0kb downstream 10.0kb downstream 12554 true Chr1: 30180954-30193507 Arabidopsis thaliana
AT1G80270 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30183508-30193507 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363494 5261 Brassicaceae View MSA
123838872 5264 Brassicales-Malvales View MSA
124337336 5266 SBM View MSA
124238154 5268 Malvidae View MSA
124068490 5270 Rosid View MSA
123736856 5271 Pentapetalae View MSA
122790484 5272 Eudicot View MSA
122044724 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.79        
cufflinks 3.298        
cufflinks 1.976        
cufflinks 3.48        
cufflinks 1.366       Low
cufflinks 5.002       High

0 Strain