Gene : NPQ1 A. thaliana TAIR10
Primary Identifier:  ? AT1G08550 Defline:  (1 of 1) K09839 - violaxanthin de-epoxidase (VDE, NPQ1)
Genomic Order:  805 Name:  ? AT1G08550
Secondary Identifier:  ? PAC:19650861
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CAROTENOID-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5945 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08550 0.5kb upstream 0.5kb upstream 3108 true Chr1: 2706424-2709531 Arabidopsis thaliana
AT1G08550 0.5kb upstream 0.5kb upstream 500 false Chr1: 2706424-2706923 Arabidopsis thaliana
AT1G08550 0.5kb downstream 0.5kb downstream 3108 true Chr1: 2706924-2710031 Arabidopsis thaliana
AT1G08550 0.5kb downstream 0.5kb downstream 500 false Chr1: 2709532-2710031 Arabidopsis thaliana
AT1G08550 1.0kb upstream 1.0kb upstream 3608 true Chr1: 2705924-2709531 Arabidopsis thaliana
AT1G08550 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2705924-2706923 Arabidopsis thaliana
AT1G08550 1.0kb downstream 1.0kb downstream 3608 true Chr1: 2706924-2710531 Arabidopsis thaliana
AT1G08550 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2709532-2710531 Arabidopsis thaliana
AT1G08550 2.0kb upstream 2.0kb upstream 4608 true Chr1: 2704924-2709531 Arabidopsis thaliana
AT1G08550 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2704924-2706923 Arabidopsis thaliana
AT1G08550 2.0kb downstream 2.0kb downstream 4608 true Chr1: 2706924-2711531 Arabidopsis thaliana
AT1G08550 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2709532-2711531 Arabidopsis thaliana
AT1G08550 5.0kb upstream 5.0kb upstream 7608 true Chr1: 2701924-2709531 Arabidopsis thaliana
AT1G08550 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2701924-2706923 Arabidopsis thaliana
AT1G08550 5.0kb downstream 5.0kb downstream 7608 true Chr1: 2706924-2714531 Arabidopsis thaliana
AT1G08550 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2709532-2714531 Arabidopsis thaliana
AT1G08550 10.0kb upstream 10.0kb upstream 12608 true Chr1: 2696924-2709531 Arabidopsis thaliana
AT1G08550 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2696924-2706923 Arabidopsis thaliana
AT1G08550 10.0kb downstream 10.0kb downstream 12608 true Chr1: 2706924-2719531 Arabidopsis thaliana
AT1G08550 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2709532-2719531 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369962 5261 Brassicaceae View MSA
123830593 5264 Brassicales-Malvales View MSA
124344334 5266 SBM View MSA
124238340 5268 Malvidae View MSA
124063145 5270 Rosid View MSA
123739304 5271 Pentapetalae View MSA
122790516 5272 Eudicot View MSA
122041813 5273 Angiosperm View MSA
121344367 5274 Embryophyte View MSA
123425421 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.603        
cufflinks 1.505        
cufflinks 27.261     High  
cufflinks 1.657        
cufflinks 23.86        
cufflinks 1.209       Low

0 Strain