Gene : RCI3 A. thaliana TAIR10
Primary Identifier:  ? AT1G05260 Defline:  (1 of 2) PTHR31235:SF39 - PEROXIDASE 3-RELATED
Genomic Order:  449 Name:  ? AT1G05260
Secondary Identifier:  ? PAC:19649599
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5466 Arabidopsis thaliana pathologic  
Athaliana PWY-7214 Arabidopsis thaliana pathologic  
Athaliana PWY-7445 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G05260 0.5kb upstream 0.5kb upstream 2173 true Chr1: 1529267-1531439 Arabidopsis thaliana
AT1G05260 0.5kb upstream 0.5kb upstream 500 false Chr1: 1529267-1529766 Arabidopsis thaliana
AT1G05260 0.5kb downstream 0.5kb downstream 2173 true Chr1: 1529767-1531939 Arabidopsis thaliana
AT1G05260 0.5kb downstream 0.5kb downstream 500 false Chr1: 1531440-1531939 Arabidopsis thaliana
AT1G05260 1.0kb upstream 1.0kb upstream 2673 true Chr1: 1528767-1531439 Arabidopsis thaliana
AT1G05260 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1528767-1529766 Arabidopsis thaliana
AT1G05260 1.0kb downstream 1.0kb downstream 2673 true Chr1: 1529767-1532439 Arabidopsis thaliana
AT1G05260 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1531440-1532439 Arabidopsis thaliana
AT1G05260 2.0kb upstream 2.0kb upstream 3673 true Chr1: 1527767-1531439 Arabidopsis thaliana
AT1G05260 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1527767-1529766 Arabidopsis thaliana
AT1G05260 2.0kb downstream 2.0kb downstream 3673 true Chr1: 1529767-1533439 Arabidopsis thaliana
AT1G05260 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1531440-1533439 Arabidopsis thaliana
AT1G05260 5.0kb upstream 5.0kb upstream 6673 true Chr1: 1524767-1531439 Arabidopsis thaliana
AT1G05260 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1524767-1529766 Arabidopsis thaliana
AT1G05260 5.0kb downstream 5.0kb downstream 6673 true Chr1: 1529767-1536439 Arabidopsis thaliana
AT1G05260 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1531440-1536439 Arabidopsis thaliana
AT1G05260 10.0kb upstream 10.0kb upstream 11673 true Chr1: 1519767-1531439 Arabidopsis thaliana
AT1G05260 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1519767-1529766 Arabidopsis thaliana
AT1G05260 10.0kb downstream 10.0kb downstream 11673 true Chr1: 1529767-1541439 Arabidopsis thaliana
AT1G05260 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1531440-1541439 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369858 5261 Brassicaceae View MSA
123838755 5264 Brassicales-Malvales View MSA
124341557 5266 SBM View MSA
124250593 5268 Malvidae View MSA
124071148 5270 Rosid View MSA
123748177 5271 Pentapetalae View MSA
122794454 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.338        
cufflinks 23.668        
cufflinks 0.256     Low Low
cufflinks 28.546        
cufflinks 0.525        
cufflinks 52.22     High High

0 Strain