Gene : AT1G72210 A. thaliana TAIR10
Defline:  (1 of 3) PTHR11969:SF22 - TRANSCRIPTION FACTOR BHLH71-RELATED Genomic Order:  6180
Name:  ? AT1G72210 Secondary Identifier:  ? PAC:19653245
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G72210 0.5kb upstream 0.5kb upstream 3141 true Chr1: 27179290-27182430 Arabidopsis thaliana
AT1G72210 0.5kb upstream 0.5kb upstream 500 false Chr1: 27179290-27179789 Arabidopsis thaliana
AT1G72210 0.5kb downstream 0.5kb downstream 3141 true Chr1: 27179790-27182930 Arabidopsis thaliana
AT1G72210 0.5kb downstream 0.5kb downstream 500 false Chr1: 27182431-27182930 Arabidopsis thaliana
AT1G72210 1.0kb upstream 1.0kb upstream 3641 true Chr1: 27178790-27182430 Arabidopsis thaliana
AT1G72210 1.0kb upstream 1.0kb upstream 1000 false Chr1: 27178790-27179789 Arabidopsis thaliana
AT1G72210 1.0kb downstream 1.0kb downstream 3641 true Chr1: 27179790-27183430 Arabidopsis thaliana
AT1G72210 1.0kb downstream 1.0kb downstream 1000 false Chr1: 27182431-27183430 Arabidopsis thaliana
AT1G72210 2.0kb upstream 2.0kb upstream 4641 true Chr1: 27177790-27182430 Arabidopsis thaliana
AT1G72210 2.0kb upstream 2.0kb upstream 2000 false Chr1: 27177790-27179789 Arabidopsis thaliana
AT1G72210 2.0kb downstream 2.0kb downstream 4641 true Chr1: 27179790-27184430 Arabidopsis thaliana
AT1G72210 2.0kb downstream 2.0kb downstream 2000 false Chr1: 27182431-27184430 Arabidopsis thaliana
AT1G72210 5.0kb upstream 5.0kb upstream 7641 true Chr1: 27174790-27182430 Arabidopsis thaliana
AT1G72210 5.0kb upstream 5.0kb upstream 5000 false Chr1: 27174790-27179789 Arabidopsis thaliana
AT1G72210 5.0kb downstream 5.0kb downstream 7641 true Chr1: 27179790-27187430 Arabidopsis thaliana
AT1G72210 5.0kb downstream 5.0kb downstream 5000 false Chr1: 27182431-27187430 Arabidopsis thaliana
AT1G72210 10.0kb upstream 10.0kb upstream 12641 true Chr1: 27169790-27182430 Arabidopsis thaliana
AT1G72210 10.0kb upstream 10.0kb upstream 10000 false Chr1: 27169790-27179789 Arabidopsis thaliana
AT1G72210 10.0kb downstream 10.0kb downstream 12641 true Chr1: 27179790-27192430 Arabidopsis thaliana
AT1G72210 10.0kb downstream 10.0kb downstream 10000 false Chr1: 27182431-27192430 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378406 5261 Brassicaceae View MSA
123836851 5264 Brassicales-Malvales View MSA
124345598 5266 SBM View MSA
124253153 5268 Malvidae View MSA
124070189 5270 Rosid View MSA
123749285 5271 Pentapetalae View MSA
122794835 5272 Eudicot View MSA
122051154 5273 Angiosperm View MSA
121350598 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.693       Low
cufflinks 8.502       High
cufflinks 0.906        
cufflinks 6.281        
cufflinks 0.791        
cufflinks 8.116        

0 Strain