Gene : AT1G79880 A. thaliana TAIR10
Defline:  (1 of 2) K11090 - lupus La protein (LA, SSB) Genomic Order:  6965
Name:  ? AT1G79880 Secondary Identifier:  ? PAC:19652510
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G79880 0.5kb upstream 0.5kb upstream 2851 true Chr1: 30046028-30048878 Arabidopsis thaliana
AT1G79880 0.5kb upstream 0.5kb upstream 500 false Chr1: 30048379-30048878 Arabidopsis thaliana
AT1G79880 0.5kb downstream 0.5kb downstream 2851 true Chr1: 30045528-30048378 Arabidopsis thaliana
AT1G79880 0.5kb downstream 0.5kb downstream 500 false Chr1: 30045528-30046027 Arabidopsis thaliana
AT1G79880 1.0kb upstream 1.0kb upstream 3351 true Chr1: 30046028-30049378 Arabidopsis thaliana
AT1G79880 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30048379-30049378 Arabidopsis thaliana
AT1G79880 1.0kb downstream 1.0kb downstream 3351 true Chr1: 30045028-30048378 Arabidopsis thaliana
AT1G79880 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30045028-30046027 Arabidopsis thaliana
AT1G79880 2.0kb upstream 2.0kb upstream 4351 true Chr1: 30046028-30050378 Arabidopsis thaliana
AT1G79880 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30048379-30050378 Arabidopsis thaliana
AT1G79880 2.0kb downstream 2.0kb downstream 4351 true Chr1: 30044028-30048378 Arabidopsis thaliana
AT1G79880 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30044028-30046027 Arabidopsis thaliana
AT1G79880 5.0kb upstream 5.0kb upstream 7351 true Chr1: 30046028-30053378 Arabidopsis thaliana
AT1G79880 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30048379-30053378 Arabidopsis thaliana
AT1G79880 5.0kb downstream 5.0kb downstream 7351 true Chr1: 30041028-30048378 Arabidopsis thaliana
AT1G79880 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30041028-30046027 Arabidopsis thaliana
AT1G79880 10.0kb upstream 10.0kb upstream 12351 true Chr1: 30046028-30058378 Arabidopsis thaliana
AT1G79880 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30048379-30058378 Arabidopsis thaliana
AT1G79880 10.0kb downstream 10.0kb downstream 12351 true Chr1: 30036028-30048378 Arabidopsis thaliana
AT1G79880 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30036028-30046027 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121691062 5273 Angiosperm View MSA
122365581 5261 Brassicaceae View MSA
123798985 5264 Brassicales-Malvales View MSA
124296556 5266 SBM View MSA
124252343 5268 Malvidae View MSA
123952736 5270 Rosid View MSA
123646767 5271 Pentapetalae View MSA
122680812 5272 Eudicot View MSA
121349930 5274 Embryophyte View MSA
123427383 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.249       Low
cufflinks 4.059       High
cufflinks 2.437        
cufflinks 3.624        
cufflinks 2.489        
cufflinks 2.798        

0 Strain