Gene : TPS1 A. thaliana TAIR10
Primary Identifier:  ? AT1G78580 Defline:  (1 of 4) PTHR10788//PTHR10788:SF6 - TREHALOSE-6-PHOSPHATE SYNTHASE // BCDNA.GH08860
Genomic Order:  6832 Name:  ? AT1G78580
Secondary Identifier:  ? PAC:19655284
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78580 0.5kb upstream 0.5kb upstream 9073 true Chr1: 29552340-29561412 Arabidopsis thaliana
AT1G78580 0.5kb upstream 0.5kb upstream 500 false Chr1: 29560913-29561412 Arabidopsis thaliana
AT1G78580 0.5kb downstream 0.5kb downstream 9073 true Chr1: 29551840-29560912 Arabidopsis thaliana
AT1G78580 0.5kb downstream 0.5kb downstream 500 false Chr1: 29551840-29552339 Arabidopsis thaliana
AT1G78580 1.0kb upstream 1.0kb upstream 9573 true Chr1: 29552340-29561912 Arabidopsis thaliana
AT1G78580 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29560913-29561912 Arabidopsis thaliana
AT1G78580 1.0kb downstream 1.0kb downstream 9573 true Chr1: 29551340-29560912 Arabidopsis thaliana
AT1G78580 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29551340-29552339 Arabidopsis thaliana
AT1G78580 2.0kb upstream 2.0kb upstream 10573 true Chr1: 29552340-29562912 Arabidopsis thaliana
AT1G78580 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29560913-29562912 Arabidopsis thaliana
AT1G78580 2.0kb downstream 2.0kb downstream 10573 true Chr1: 29550340-29560912 Arabidopsis thaliana
AT1G78580 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29550340-29552339 Arabidopsis thaliana
AT1G78580 5.0kb upstream 5.0kb upstream 13573 true Chr1: 29552340-29565912 Arabidopsis thaliana
AT1G78580 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29560913-29565912 Arabidopsis thaliana
AT1G78580 5.0kb downstream 5.0kb downstream 13573 true Chr1: 29547340-29560912 Arabidopsis thaliana
AT1G78580 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29547340-29552339 Arabidopsis thaliana
AT1G78580 10.0kb upstream 10.0kb upstream 18573 true Chr1: 29552340-29570912 Arabidopsis thaliana
AT1G78580 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29560913-29570912 Arabidopsis thaliana
AT1G78580 10.0kb downstream 10.0kb downstream 18573 true Chr1: 29542340-29560912 Arabidopsis thaliana
AT1G78580 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29542340-29552339 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376046 5261 Brassicaceae View MSA
123833374 5264 Brassicales-Malvales View MSA
124350431 5266 SBM View MSA
124251076 5268 Malvidae View MSA
124068150 5270 Rosid View MSA
123743549 5271 Pentapetalae View MSA
122786791 5272 Eudicot View MSA
122045463 5273 Angiosperm View MSA
121344657 5274 Embryophyte View MSA
123428106 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.996        
cufflinks 26.528       High
cufflinks 5.413        
cufflinks 18.489        
cufflinks 4.687        
cufflinks 17.628        

0 Strain