Gene : NCED9 A. thaliana TAIR10
Primary Identifier:  ? AT1G78390 Defline:  (1 of 2) PTHR10543//PTHR10543:SF26 - BETA-CAROTENE DIOXYGENASE // 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED
Genomic Order:  6812 Name:  ? AT1G78390
Secondary Identifier:  ? PAC:19650075
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-695 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78390 0.5kb upstream 0.5kb upstream 2481 true Chr1: 29490895-29493375 Arabidopsis thaliana
AT1G78390 0.5kb upstream 0.5kb upstream 500 false Chr1: 29492876-29493375 Arabidopsis thaliana
AT1G78390 0.5kb downstream 0.5kb downstream 2481 true Chr1: 29490395-29492875 Arabidopsis thaliana
AT1G78390 0.5kb downstream 0.5kb downstream 500 false Chr1: 29490395-29490894 Arabidopsis thaliana
AT1G78390 1.0kb upstream 1.0kb upstream 2981 true Chr1: 29490895-29493875 Arabidopsis thaliana
AT1G78390 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29492876-29493875 Arabidopsis thaliana
AT1G78390 1.0kb downstream 1.0kb downstream 2981 true Chr1: 29489895-29492875 Arabidopsis thaliana
AT1G78390 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29489895-29490894 Arabidopsis thaliana
AT1G78390 2.0kb upstream 2.0kb upstream 3981 true Chr1: 29490895-29494875 Arabidopsis thaliana
AT1G78390 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29492876-29494875 Arabidopsis thaliana
AT1G78390 2.0kb downstream 2.0kb downstream 3981 true Chr1: 29488895-29492875 Arabidopsis thaliana
AT1G78390 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29488895-29490894 Arabidopsis thaliana
AT1G78390 5.0kb upstream 5.0kb upstream 6981 true Chr1: 29490895-29497875 Arabidopsis thaliana
AT1G78390 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29492876-29497875 Arabidopsis thaliana
AT1G78390 5.0kb downstream 5.0kb downstream 6981 true Chr1: 29485895-29492875 Arabidopsis thaliana
AT1G78390 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29485895-29490894 Arabidopsis thaliana
AT1G78390 10.0kb upstream 10.0kb upstream 11981 true Chr1: 29490895-29502875 Arabidopsis thaliana
AT1G78390 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29492876-29502875 Arabidopsis thaliana
AT1G78390 10.0kb downstream 10.0kb downstream 11981 true Chr1: 29480895-29492875 Arabidopsis thaliana
AT1G78390 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29480895-29490894 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366050 5261 Brassicaceae View MSA
123839521 5264 Brassicales-Malvales View MSA
124350973 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low Low
cufflinks 0.321     Low High
cufflinks 0.016     Low  
cufflinks 0.302     Low  
cufflinks 0.008     Low  
cufflinks 0.171     Low  

0 Strain