Gene : AT1G78070 A. thaliana TAIR10
Defline:  (1 of 1) KOG4532 - WD40-like repeat containing protein Genomic Order:  6782
Name:  ? AT1G78070 Secondary Identifier:  ? PAC:19652940
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78070 0.5kb upstream 0.5kb upstream 4472 true Chr1: 29354522-29358993 Arabidopsis thaliana
AT1G78070 0.5kb upstream 0.5kb upstream 500 false Chr1: 29354522-29355021 Arabidopsis thaliana
AT1G78070 0.5kb downstream 0.5kb downstream 4472 true Chr1: 29355022-29359493 Arabidopsis thaliana
AT1G78070 0.5kb downstream 0.5kb downstream 500 false Chr1: 29358994-29359493 Arabidopsis thaliana
AT1G78070 1.0kb upstream 1.0kb upstream 4972 true Chr1: 29354022-29358993 Arabidopsis thaliana
AT1G78070 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29354022-29355021 Arabidopsis thaliana
AT1G78070 1.0kb downstream 1.0kb downstream 4972 true Chr1: 29355022-29359993 Arabidopsis thaliana
AT1G78070 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29358994-29359993 Arabidopsis thaliana
AT1G78070 2.0kb upstream 2.0kb upstream 5972 true Chr1: 29353022-29358993 Arabidopsis thaliana
AT1G78070 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29353022-29355021 Arabidopsis thaliana
AT1G78070 2.0kb downstream 2.0kb downstream 5972 true Chr1: 29355022-29360993 Arabidopsis thaliana
AT1G78070 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29358994-29360993 Arabidopsis thaliana
AT1G78070 5.0kb upstream 5.0kb upstream 8972 true Chr1: 29350022-29358993 Arabidopsis thaliana
AT1G78070 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29350022-29355021 Arabidopsis thaliana
AT1G78070 5.0kb downstream 5.0kb downstream 8972 true Chr1: 29355022-29363993 Arabidopsis thaliana
AT1G78070 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29358994-29363993 Arabidopsis thaliana
AT1G78070 10.0kb upstream 10.0kb upstream 13972 true Chr1: 29345022-29358993 Arabidopsis thaliana
AT1G78070 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29345022-29355021 Arabidopsis thaliana
AT1G78070 10.0kb downstream 10.0kb downstream 13972 true Chr1: 29355022-29368993 Arabidopsis thaliana
AT1G78070 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29358994-29368993 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363307 5261 Brassicaceae View MSA
123835477 5264 Brassicales-Malvales View MSA
124338308 5266 SBM View MSA
124248802 5268 Malvidae View MSA
124063136 5270 Rosid View MSA
123741665 5271 Pentapetalae View MSA
122789476 5272 Eudicot View MSA
122045317 5273 Angiosperm View MSA
121348063 5274 Embryophyte View MSA
123428605 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.415       Low
cufflinks 128.682     High High
cufflinks 13.69        
cufflinks 74.377     High  
cufflinks 12.852        
cufflinks 98.314     High  

0 Strain