Gene : AT1G77580 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31580:SF2 - FILAMENT-LIKE PLANT PROTEIN 1-RELATED Genomic Order:  6728
Name:  ? AT1G77580 Secondary Identifier:  ? PAC:19656325
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G77580 0.5kb upstream 0.5kb upstream 4060 true Chr1: 29144025-29148084 Arabidopsis thaliana
AT1G77580 0.5kb upstream 0.5kb upstream 500 false Chr1: 29147585-29148084 Arabidopsis thaliana
AT1G77580 0.5kb downstream 0.5kb downstream 4060 true Chr1: 29143525-29147584 Arabidopsis thaliana
AT1G77580 0.5kb downstream 0.5kb downstream 500 false Chr1: 29143525-29144024 Arabidopsis thaliana
AT1G77580 1.0kb upstream 1.0kb upstream 4560 true Chr1: 29144025-29148584 Arabidopsis thaliana
AT1G77580 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29147585-29148584 Arabidopsis thaliana
AT1G77580 1.0kb downstream 1.0kb downstream 4560 true Chr1: 29143025-29147584 Arabidopsis thaliana
AT1G77580 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29143025-29144024 Arabidopsis thaliana
AT1G77580 2.0kb upstream 2.0kb upstream 5560 true Chr1: 29144025-29149584 Arabidopsis thaliana
AT1G77580 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29147585-29149584 Arabidopsis thaliana
AT1G77580 2.0kb downstream 2.0kb downstream 5560 true Chr1: 29142025-29147584 Arabidopsis thaliana
AT1G77580 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29142025-29144024 Arabidopsis thaliana
AT1G77580 5.0kb upstream 5.0kb upstream 8560 true Chr1: 29144025-29152584 Arabidopsis thaliana
AT1G77580 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29147585-29152584 Arabidopsis thaliana
AT1G77580 5.0kb downstream 5.0kb downstream 8560 true Chr1: 29139025-29147584 Arabidopsis thaliana
AT1G77580 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29139025-29144024 Arabidopsis thaliana
AT1G77580 10.0kb upstream 10.0kb upstream 13560 true Chr1: 29144025-29157584 Arabidopsis thaliana
AT1G77580 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29147585-29157584 Arabidopsis thaliana
AT1G77580 10.0kb downstream 10.0kb downstream 13560 true Chr1: 29134025-29147584 Arabidopsis thaliana
AT1G77580 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29134025-29144024 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380499 5261 Brassicaceae View MSA
123839144 5264 Brassicales-Malvales View MSA
124348232 5266 SBM View MSA
124250015 5268 Malvidae View MSA
124071762 5270 Rosid View MSA
123742978 5271 Pentapetalae View MSA
122791145 5272 Eudicot View MSA
122043487 5273 Angiosperm View MSA
121310135 5274 Embryophyte View MSA
123347707 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.486        
cufflinks 1.527       Low
cufflinks 2.384        
cufflinks 2.363        
cufflinks 2.226        
cufflinks 2.76        

0 Strain