Gene : AT1G77310 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21669 - CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS Genomic Order:  6701
Name:  ? AT1G77310 Secondary Identifier:  ? PAC:19657784
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G77310 0.5kb upstream 0.5kb upstream 5335 true Chr1: 29051005-29056339 Arabidopsis thaliana
AT1G77310 0.5kb upstream 0.5kb upstream 500 false Chr1: 29051005-29051504 Arabidopsis thaliana
AT1G77310 0.5kb downstream 0.5kb downstream 5335 true Chr1: 29051505-29056839 Arabidopsis thaliana
AT1G77310 0.5kb downstream 0.5kb downstream 500 false Chr1: 29056340-29056839 Arabidopsis thaliana
AT1G77310 1.0kb upstream 1.0kb upstream 5835 true Chr1: 29050505-29056339 Arabidopsis thaliana
AT1G77310 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29050505-29051504 Arabidopsis thaliana
AT1G77310 1.0kb downstream 1.0kb downstream 5835 true Chr1: 29051505-29057339 Arabidopsis thaliana
AT1G77310 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29056340-29057339 Arabidopsis thaliana
AT1G77310 2.0kb upstream 2.0kb upstream 6835 true Chr1: 29049505-29056339 Arabidopsis thaliana
AT1G77310 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29049505-29051504 Arabidopsis thaliana
AT1G77310 2.0kb downstream 2.0kb downstream 6835 true Chr1: 29051505-29058339 Arabidopsis thaliana
AT1G77310 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29056340-29058339 Arabidopsis thaliana
AT1G77310 5.0kb upstream 5.0kb upstream 9835 true Chr1: 29046505-29056339 Arabidopsis thaliana
AT1G77310 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29046505-29051504 Arabidopsis thaliana
AT1G77310 5.0kb downstream 5.0kb downstream 9835 true Chr1: 29051505-29061339 Arabidopsis thaliana
AT1G77310 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29056340-29061339 Arabidopsis thaliana
AT1G77310 10.0kb upstream 10.0kb upstream 14835 true Chr1: 29041505-29056339 Arabidopsis thaliana
AT1G77310 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29041505-29051504 Arabidopsis thaliana
AT1G77310 10.0kb downstream 10.0kb downstream 14835 true Chr1: 29051505-29066339 Arabidopsis thaliana
AT1G77310 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29056340-29066339 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379811 5261 Brassicaceae View MSA
123837582 5264 Brassicales-Malvales View MSA
124339372 5266 SBM View MSA
124240339 5268 Malvidae View MSA
124063112 5270 Rosid View MSA
123743839 5271 Pentapetalae View MSA
122787067 5272 Eudicot View MSA
122045408 5273 Angiosperm View MSA
121344687 5274 Embryophyte View MSA
123380086 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.614       Low
cufflinks 1.25       High
cufflinks 0.691        
cufflinks 1.234       High
cufflinks 0.708        
cufflinks 1.085        

0 Strain