Gene : AT1G76170 A. thaliana TAIR10
Defline:  (1 of 2) K14168 - cytoplasmic tRNA 2-thiolation protein 1 (CTU1, NCS6) Genomic Order:  6580
Name:  ? AT1G76170 Secondary Identifier:  ? PAC:19655694
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G76170 0.5kb upstream 0.5kb upstream 2687 true Chr1: 28584039-28586725 Arabidopsis thaliana
AT1G76170 0.5kb upstream 0.5kb upstream 500 false Chr1: 28586226-28586725 Arabidopsis thaliana
AT1G76170 0.5kb downstream 0.5kb downstream 2687 true Chr1: 28583539-28586225 Arabidopsis thaliana
AT1G76170 0.5kb downstream 0.5kb downstream 500 false Chr1: 28583539-28584038 Arabidopsis thaliana
AT1G76170 1.0kb upstream 1.0kb upstream 3187 true Chr1: 28584039-28587225 Arabidopsis thaliana
AT1G76170 1.0kb upstream 1.0kb upstream 1000 false Chr1: 28586226-28587225 Arabidopsis thaliana
AT1G76170 1.0kb downstream 1.0kb downstream 3187 true Chr1: 28583039-28586225 Arabidopsis thaliana
AT1G76170 1.0kb downstream 1.0kb downstream 1000 false Chr1: 28583039-28584038 Arabidopsis thaliana
AT1G76170 2.0kb upstream 2.0kb upstream 4187 true Chr1: 28584039-28588225 Arabidopsis thaliana
AT1G76170 2.0kb upstream 2.0kb upstream 2000 false Chr1: 28586226-28588225 Arabidopsis thaliana
AT1G76170 2.0kb downstream 2.0kb downstream 4187 true Chr1: 28582039-28586225 Arabidopsis thaliana
AT1G76170 2.0kb downstream 2.0kb downstream 2000 false Chr1: 28582039-28584038 Arabidopsis thaliana
AT1G76170 5.0kb upstream 5.0kb upstream 7187 true Chr1: 28584039-28591225 Arabidopsis thaliana
AT1G76170 5.0kb upstream 5.0kb upstream 5000 false Chr1: 28586226-28591225 Arabidopsis thaliana
AT1G76170 5.0kb downstream 5.0kb downstream 7187 true Chr1: 28579039-28586225 Arabidopsis thaliana
AT1G76170 5.0kb downstream 5.0kb downstream 5000 false Chr1: 28579039-28584038 Arabidopsis thaliana
AT1G76170 10.0kb upstream 10.0kb upstream 12187 true Chr1: 28584039-28596225 Arabidopsis thaliana
AT1G76170 10.0kb upstream 10.0kb upstream 10000 false Chr1: 28586226-28596225 Arabidopsis thaliana
AT1G76170 10.0kb downstream 10.0kb downstream 12187 true Chr1: 28574039-28586225 Arabidopsis thaliana
AT1G76170 10.0kb downstream 10.0kb downstream 10000 false Chr1: 28574039-28584038 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328872 5261 Brassicaceae Singleton cluster - no MSA
123770201 5264 Brassicales-Malvales Singleton cluster - no MSA
124347026 5266 SBM View MSA
124240042 5268 Malvidae View MSA
124064054 5270 Rosid View MSA
123742084 5271 Pentapetalae View MSA
122790612 5272 Eudicot View MSA
122048376 5273 Angiosperm View MSA
121346123 5274 Embryophyte View MSA
123424890 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.101        
cufflinks 7.225       High
cufflinks 4.276        
cufflinks 6.257        
cufflinks 4.255        
cufflinks 5.534        

0 Strain