Gene : MBP1 A. thaliana TAIR10
Primary Identifier:  ? AT1G52040 Defline:  (1 of 39) PTHR23244:SF208 - F14M2.9 PROTEIN-RELATED
Genomic Order:  4233 Name:  ? AT1G52040
Secondary Identifier:  ? PAC:19658087
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52040 0.5kb upstream 0.5kb upstream 2908 true Chr1: 19350375-19353282 Arabidopsis thaliana
AT1G52040 0.5kb upstream 0.5kb upstream 500 false Chr1: 19352783-19353282 Arabidopsis thaliana
AT1G52040 0.5kb downstream 0.5kb downstream 2908 true Chr1: 19349875-19352782 Arabidopsis thaliana
AT1G52040 0.5kb downstream 0.5kb downstream 500 false Chr1: 19349875-19350374 Arabidopsis thaliana
AT1G52040 1.0kb upstream 1.0kb upstream 3408 true Chr1: 19350375-19353782 Arabidopsis thaliana
AT1G52040 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19352783-19353782 Arabidopsis thaliana
AT1G52040 1.0kb downstream 1.0kb downstream 3408 true Chr1: 19349375-19352782 Arabidopsis thaliana
AT1G52040 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19349375-19350374 Arabidopsis thaliana
AT1G52040 2.0kb upstream 2.0kb upstream 4408 true Chr1: 19350375-19354782 Arabidopsis thaliana
AT1G52040 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19352783-19354782 Arabidopsis thaliana
AT1G52040 2.0kb downstream 2.0kb downstream 4408 true Chr1: 19348375-19352782 Arabidopsis thaliana
AT1G52040 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19348375-19350374 Arabidopsis thaliana
AT1G52040 5.0kb upstream 5.0kb upstream 7408 true Chr1: 19350375-19357782 Arabidopsis thaliana
AT1G52040 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19352783-19357782 Arabidopsis thaliana
AT1G52040 5.0kb downstream 5.0kb downstream 7408 true Chr1: 19345375-19352782 Arabidopsis thaliana
AT1G52040 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19345375-19350374 Arabidopsis thaliana
AT1G52040 10.0kb upstream 10.0kb upstream 12408 true Chr1: 19350375-19362782 Arabidopsis thaliana
AT1G52040 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19352783-19362782 Arabidopsis thaliana
AT1G52040 10.0kb downstream 10.0kb downstream 12408 true Chr1: 19340375-19352782 Arabidopsis thaliana
AT1G52040 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19340375-19350374 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379063 5261 Brassicaceae View MSA
123802085 5264 Brassicales-Malvales View MSA
124299306 5266 SBM View MSA
124150757 5268 Malvidae View MSA
123876319 5270 Rosid View MSA
123753130 5271 Pentapetalae View MSA
122797480 5272 Eudicot View MSA
122051624 5273 Angiosperm View MSA
121351046 5274 Embryophyte View MSA
123381988 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 175.522     High  
cufflinks 0.285     Low Low
cufflinks 74.617     High  
cufflinks 4.458        
cufflinks 147.551     High  
cufflinks 1.143        

0 Strain