Gene : AT1G48100 A. thaliana TAIR10
Defline:  (1 of 56) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  3835
Name:  ? AT1G48100 Secondary Identifier:  ? PAC:19653928
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48100 0.5kb upstream 0.5kb upstream 3578 true Chr1: 17766374-17769951 Arabidopsis thaliana
AT1G48100 0.5kb upstream 0.5kb upstream 500 false Chr1: 17766374-17766873 Arabidopsis thaliana
AT1G48100 0.5kb downstream 0.5kb downstream 3578 true Chr1: 17766874-17770451 Arabidopsis thaliana
AT1G48100 0.5kb downstream 0.5kb downstream 500 false Chr1: 17769952-17770451 Arabidopsis thaliana
AT1G48100 1.0kb upstream 1.0kb upstream 4078 true Chr1: 17765874-17769951 Arabidopsis thaliana
AT1G48100 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17765874-17766873 Arabidopsis thaliana
AT1G48100 1.0kb downstream 1.0kb downstream 4078 true Chr1: 17766874-17770951 Arabidopsis thaliana
AT1G48100 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17769952-17770951 Arabidopsis thaliana
AT1G48100 2.0kb upstream 2.0kb upstream 5078 true Chr1: 17764874-17769951 Arabidopsis thaliana
AT1G48100 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17764874-17766873 Arabidopsis thaliana
AT1G48100 2.0kb downstream 2.0kb downstream 5078 true Chr1: 17766874-17771951 Arabidopsis thaliana
AT1G48100 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17769952-17771951 Arabidopsis thaliana
AT1G48100 5.0kb upstream 5.0kb upstream 8078 true Chr1: 17761874-17769951 Arabidopsis thaliana
AT1G48100 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17761874-17766873 Arabidopsis thaliana
AT1G48100 5.0kb downstream 5.0kb downstream 8078 true Chr1: 17766874-17774951 Arabidopsis thaliana
AT1G48100 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17769952-17774951 Arabidopsis thaliana
AT1G48100 10.0kb upstream 10.0kb upstream 13078 true Chr1: 17756874-17769951 Arabidopsis thaliana
AT1G48100 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17756874-17766873 Arabidopsis thaliana
AT1G48100 10.0kb downstream 10.0kb downstream 13078 true Chr1: 17766874-17779951 Arabidopsis thaliana
AT1G48100 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17769952-17779951 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372611 5261 Brassicaceae View MSA
123835792 5264 Brassicales-Malvales View MSA
124337988 5266 SBM View MSA
124242051 5268 Malvidae View MSA
124065487 5270 Rosid View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.59       Low
cufflinks 4.832        
cufflinks 0.669        
cufflinks 4.302        
cufflinks 0.859        
cufflinks 6.361       High

0 Strain