Gene : AT1G43980 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  3646
Name:  ? AT1G43980 Secondary Identifier:  ? PAC:19653399
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G43980 0.5kb upstream 0.5kb upstream 2366 true Chr1: 16687637-16690002 Arabidopsis thaliana
AT1G43980 0.5kb upstream 0.5kb upstream 500 false Chr1: 16689503-16690002 Arabidopsis thaliana
AT1G43980 0.5kb downstream 0.5kb downstream 2366 true Chr1: 16687137-16689502 Arabidopsis thaliana
AT1G43980 0.5kb downstream 0.5kb downstream 500 false Chr1: 16687137-16687636 Arabidopsis thaliana
AT1G43980 1.0kb upstream 1.0kb upstream 2866 true Chr1: 16687637-16690502 Arabidopsis thaliana
AT1G43980 1.0kb upstream 1.0kb upstream 1000 false Chr1: 16689503-16690502 Arabidopsis thaliana
AT1G43980 1.0kb downstream 1.0kb downstream 2866 true Chr1: 16686637-16689502 Arabidopsis thaliana
AT1G43980 1.0kb downstream 1.0kb downstream 1000 false Chr1: 16686637-16687636 Arabidopsis thaliana
AT1G43980 2.0kb upstream 2.0kb upstream 3866 true Chr1: 16687637-16691502 Arabidopsis thaliana
AT1G43980 2.0kb upstream 2.0kb upstream 2000 false Chr1: 16689503-16691502 Arabidopsis thaliana
AT1G43980 2.0kb downstream 2.0kb downstream 3866 true Chr1: 16685637-16689502 Arabidopsis thaliana
AT1G43980 2.0kb downstream 2.0kb downstream 2000 false Chr1: 16685637-16687636 Arabidopsis thaliana
AT1G43980 5.0kb upstream 5.0kb upstream 6866 true Chr1: 16687637-16694502 Arabidopsis thaliana
AT1G43980 5.0kb upstream 5.0kb upstream 5000 false Chr1: 16689503-16694502 Arabidopsis thaliana
AT1G43980 5.0kb downstream 5.0kb downstream 6866 true Chr1: 16682637-16689502 Arabidopsis thaliana
AT1G43980 5.0kb downstream 5.0kb downstream 5000 false Chr1: 16682637-16687636 Arabidopsis thaliana
AT1G43980 10.0kb upstream 10.0kb upstream 11866 true Chr1: 16687637-16699502 Arabidopsis thaliana
AT1G43980 10.0kb upstream 10.0kb upstream 10000 false Chr1: 16689503-16699502 Arabidopsis thaliana
AT1G43980 10.0kb downstream 10.0kb downstream 11866 true Chr1: 16677637-16689502 Arabidopsis thaliana
AT1G43980 10.0kb downstream 10.0kb downstream 10000 false Chr1: 16677637-16687636 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372981 5261 Brassicaceae View MSA
123831030 5264 Brassicales-Malvales View MSA
124336473 5266 SBM View MSA
124242018 5268 Malvidae View MSA
124070457 5270 Rosid View MSA
123736471 5271 Pentapetalae View MSA
122786011 5272 Eudicot View MSA
122048876 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.448        
cufflinks 1.144        
cufflinks 0.823        
cufflinks 1.25        
cufflinks 0.587       Low
cufflinks 1.32        

0 Strain