Gene : AT1G43245 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12197:SF160 - PROTEIN SET DOMAIN GROUP 41 Genomic Order:  3607
Name:  ? AT1G43245 Secondary Identifier:  ? PAC:19658175
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G43245 0.5kb upstream 0.5kb upstream 2549 true Chr1: 16308882-16311430 Arabidopsis thaliana
AT1G43245 0.5kb upstream 0.5kb upstream 500 false Chr1: 16310931-16311430 Arabidopsis thaliana
AT1G43245 0.5kb downstream 0.5kb downstream 2549 true Chr1: 16308382-16310930 Arabidopsis thaliana
AT1G43245 0.5kb downstream 0.5kb downstream 500 false Chr1: 16308382-16308881 Arabidopsis thaliana
AT1G43245 1.0kb upstream 1.0kb upstream 3049 true Chr1: 16308882-16311930 Arabidopsis thaliana
AT1G43245 1.0kb upstream 1.0kb upstream 1000 false Chr1: 16310931-16311930 Arabidopsis thaliana
AT1G43245 1.0kb downstream 1.0kb downstream 3049 true Chr1: 16307882-16310930 Arabidopsis thaliana
AT1G43245 1.0kb downstream 1.0kb downstream 1000 false Chr1: 16307882-16308881 Arabidopsis thaliana
AT1G43245 2.0kb upstream 2.0kb upstream 4049 true Chr1: 16308882-16312930 Arabidopsis thaliana
AT1G43245 2.0kb upstream 2.0kb upstream 2000 false Chr1: 16310931-16312930 Arabidopsis thaliana
AT1G43245 2.0kb downstream 2.0kb downstream 4049 true Chr1: 16306882-16310930 Arabidopsis thaliana
AT1G43245 2.0kb downstream 2.0kb downstream 2000 false Chr1: 16306882-16308881 Arabidopsis thaliana
AT1G43245 5.0kb upstream 5.0kb upstream 7049 true Chr1: 16308882-16315930 Arabidopsis thaliana
AT1G43245 5.0kb upstream 5.0kb upstream 5000 false Chr1: 16310931-16315930 Arabidopsis thaliana
AT1G43245 5.0kb downstream 5.0kb downstream 7049 true Chr1: 16303882-16310930 Arabidopsis thaliana
AT1G43245 5.0kb downstream 5.0kb downstream 5000 false Chr1: 16303882-16308881 Arabidopsis thaliana
AT1G43245 10.0kb upstream 10.0kb upstream 12049 true Chr1: 16308882-16320930 Arabidopsis thaliana
AT1G43245 10.0kb upstream 10.0kb upstream 10000 false Chr1: 16310931-16320930 Arabidopsis thaliana
AT1G43245 10.0kb downstream 10.0kb downstream 12049 true Chr1: 16298882-16310930 Arabidopsis thaliana
AT1G43245 10.0kb downstream 10.0kb downstream 10000 false Chr1: 16298882-16308881 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367879 5261 Brassicaceae View MSA
123828046 5264 Brassicales-Malvales View MSA
124343061 5266 SBM View MSA
124241407 5268 Malvidae View MSA
124050457 5270 Rosid View MSA
123748819 5271 Pentapetalae View MSA
122793120 5272 Eudicot View MSA
122044425 5273 Angiosperm View MSA
121310294 5274 Embryophyte View MSA
123428850 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.053        
cufflinks 3.0        
cufflinks 3.077        
cufflinks 3.921       High
cufflinks 3.575        
cufflinks 2.006       Low

0 Strain