Gene : EGY3 A. thaliana TAIR10
Primary Identifier:  ? AT1G17870 Defline:  (1 of 1) PTHR31412//PTHR31412:SF2 - FAMILY NOT NAMED // ZINC METALLOPEPTIDASE EGY3, CHLOROPLASTIC-RELATED
Genomic Order:  1801 Name:  ? AT1G17870
Secondary Identifier:  ? PAC:19657994
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17870 0.5kb upstream 0.5kb upstream 2784 true Chr1: 6149939-6152722 Arabidopsis thaliana
AT1G17870 0.5kb upstream 0.5kb upstream 500 false Chr1: 6152223-6152722 Arabidopsis thaliana
AT1G17870 0.5kb downstream 0.5kb downstream 2784 true Chr1: 6149439-6152222 Arabidopsis thaliana
AT1G17870 0.5kb downstream 0.5kb downstream 500 false Chr1: 6149439-6149938 Arabidopsis thaliana
AT1G17870 1.0kb upstream 1.0kb upstream 3284 true Chr1: 6149939-6153222 Arabidopsis thaliana
AT1G17870 1.0kb upstream 1.0kb upstream 1000 false Chr1: 6152223-6153222 Arabidopsis thaliana
AT1G17870 1.0kb downstream 1.0kb downstream 3284 true Chr1: 6148939-6152222 Arabidopsis thaliana
AT1G17870 1.0kb downstream 1.0kb downstream 1000 false Chr1: 6148939-6149938 Arabidopsis thaliana
AT1G17870 2.0kb upstream 2.0kb upstream 4284 true Chr1: 6149939-6154222 Arabidopsis thaliana
AT1G17870 2.0kb upstream 2.0kb upstream 2000 false Chr1: 6152223-6154222 Arabidopsis thaliana
AT1G17870 2.0kb downstream 2.0kb downstream 4284 true Chr1: 6147939-6152222 Arabidopsis thaliana
AT1G17870 2.0kb downstream 2.0kb downstream 2000 false Chr1: 6147939-6149938 Arabidopsis thaliana
AT1G17870 5.0kb upstream 5.0kb upstream 7284 true Chr1: 6149939-6157222 Arabidopsis thaliana
AT1G17870 5.0kb upstream 5.0kb upstream 5000 false Chr1: 6152223-6157222 Arabidopsis thaliana
AT1G17870 5.0kb downstream 5.0kb downstream 7284 true Chr1: 6144939-6152222 Arabidopsis thaliana
AT1G17870 5.0kb downstream 5.0kb downstream 5000 false Chr1: 6144939-6149938 Arabidopsis thaliana
AT1G17870 10.0kb upstream 10.0kb upstream 12284 true Chr1: 6149939-6162222 Arabidopsis thaliana
AT1G17870 10.0kb upstream 10.0kb upstream 10000 false Chr1: 6152223-6162222 Arabidopsis thaliana
AT1G17870 10.0kb downstream 10.0kb downstream 12284 true Chr1: 6139939-6152222 Arabidopsis thaliana
AT1G17870 10.0kb downstream 10.0kb downstream 10000 false Chr1: 6139939-6149938 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371897 5261 Brassicaceae View MSA
123828823 5264 Brassicales-Malvales View MSA
124342564 5266 SBM View MSA
124253420 5268 Malvidae View MSA
124067271 5270 Rosid View MSA
123738003 5271 Pentapetalae View MSA
122792522 5272 Eudicot View MSA
122042498 5273 Angiosperm View MSA
121347143 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.926        
cufflinks 2.888       High
cufflinks 1.315       Low
cufflinks 2.522        
cufflinks 1.241       Low
cufflinks 2.712        

0 Strain