Gene : AT1G17640 A. thaliana TAIR10
Defline:  (1 of 1) PTHR24012:SF318 - RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN Genomic Order:  1778
Name:  ? AT1G17640 Secondary Identifier:  ? PAC:19651238
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17640 0.5kb upstream 0.5kb upstream 2205 true Chr1: 6067394-6069598 Arabidopsis thaliana
AT1G17640 0.5kb upstream 0.5kb upstream 500 false Chr1: 6069099-6069598 Arabidopsis thaliana
AT1G17640 0.5kb downstream 0.5kb downstream 2205 true Chr1: 6066894-6069098 Arabidopsis thaliana
AT1G17640 0.5kb downstream 0.5kb downstream 500 false Chr1: 6066894-6067393 Arabidopsis thaliana
AT1G17640 1.0kb upstream 1.0kb upstream 2705 true Chr1: 6067394-6070098 Arabidopsis thaliana
AT1G17640 1.0kb upstream 1.0kb upstream 1000 false Chr1: 6069099-6070098 Arabidopsis thaliana
AT1G17640 1.0kb downstream 1.0kb downstream 2705 true Chr1: 6066394-6069098 Arabidopsis thaliana
AT1G17640 1.0kb downstream 1.0kb downstream 1000 false Chr1: 6066394-6067393 Arabidopsis thaliana
AT1G17640 2.0kb upstream 2.0kb upstream 3705 true Chr1: 6067394-6071098 Arabidopsis thaliana
AT1G17640 2.0kb upstream 2.0kb upstream 2000 false Chr1: 6069099-6071098 Arabidopsis thaliana
AT1G17640 2.0kb downstream 2.0kb downstream 3705 true Chr1: 6065394-6069098 Arabidopsis thaliana
AT1G17640 2.0kb downstream 2.0kb downstream 2000 false Chr1: 6065394-6067393 Arabidopsis thaliana
AT1G17640 5.0kb upstream 5.0kb upstream 6705 true Chr1: 6067394-6074098 Arabidopsis thaliana
AT1G17640 5.0kb upstream 5.0kb upstream 5000 false Chr1: 6069099-6074098 Arabidopsis thaliana
AT1G17640 5.0kb downstream 5.0kb downstream 6705 true Chr1: 6062394-6069098 Arabidopsis thaliana
AT1G17640 5.0kb downstream 5.0kb downstream 5000 false Chr1: 6062394-6067393 Arabidopsis thaliana
AT1G17640 10.0kb upstream 10.0kb upstream 11705 true Chr1: 6067394-6079098 Arabidopsis thaliana
AT1G17640 10.0kb upstream 10.0kb upstream 10000 false Chr1: 6069099-6079098 Arabidopsis thaliana
AT1G17640 10.0kb downstream 10.0kb downstream 11705 true Chr1: 6057394-6069098 Arabidopsis thaliana
AT1G17640 10.0kb downstream 10.0kb downstream 10000 false Chr1: 6057394-6067393 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365137 5261 Brassicaceae View MSA
123798897 5264 Brassicales-Malvales View MSA
124296473 5266 SBM View MSA
124239869 5268 Malvidae View MSA
124064192 5270 Rosid View MSA
123749875 5271 Pentapetalae View MSA
122795873 5272 Eudicot View MSA
122049849 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351304 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.487        
cufflinks 4.307        
cufflinks 4.12        
cufflinks 5.344       High
cufflinks 3.696        
cufflinks 3.404        

0 Strain