Gene : LHCB6 A. thaliana TAIR10
Primary Identifier:  ? AT1G15820 Defline:  (1 of 1) K08917 - light-harvesting complex II chlorophyll a/b binding protein 6 (LHCB6)
Genomic Order:  1590 Name:  ? AT1G15820
Secondary Identifier:  ? PAC:19651602
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G15820 0.5kb upstream 0.5kb upstream 1898 true Chr1: 5446462-5448359 Arabidopsis thaliana
AT1G15820 0.5kb upstream 0.5kb upstream 500 false Chr1: 5447860-5448359 Arabidopsis thaliana
AT1G15820 0.5kb downstream 0.5kb downstream 1898 true Chr1: 5445962-5447859 Arabidopsis thaliana
AT1G15820 0.5kb downstream 0.5kb downstream 500 false Chr1: 5445962-5446461 Arabidopsis thaliana
AT1G15820 1.0kb upstream 1.0kb upstream 2398 true Chr1: 5446462-5448859 Arabidopsis thaliana
AT1G15820 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5447860-5448859 Arabidopsis thaliana
AT1G15820 1.0kb downstream 1.0kb downstream 2398 true Chr1: 5445462-5447859 Arabidopsis thaliana
AT1G15820 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5445462-5446461 Arabidopsis thaliana
AT1G15820 2.0kb upstream 2.0kb upstream 3398 true Chr1: 5446462-5449859 Arabidopsis thaliana
AT1G15820 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5447860-5449859 Arabidopsis thaliana
AT1G15820 2.0kb downstream 2.0kb downstream 3398 true Chr1: 5444462-5447859 Arabidopsis thaliana
AT1G15820 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5444462-5446461 Arabidopsis thaliana
AT1G15820 5.0kb upstream 5.0kb upstream 6398 true Chr1: 5446462-5452859 Arabidopsis thaliana
AT1G15820 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5447860-5452859 Arabidopsis thaliana
AT1G15820 5.0kb downstream 5.0kb downstream 6398 true Chr1: 5441462-5447859 Arabidopsis thaliana
AT1G15820 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5441462-5446461 Arabidopsis thaliana
AT1G15820 10.0kb upstream 10.0kb upstream 11398 true Chr1: 5446462-5457859 Arabidopsis thaliana
AT1G15820 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5447860-5457859 Arabidopsis thaliana
AT1G15820 10.0kb downstream 10.0kb downstream 11398 true Chr1: 5436462-5447859 Arabidopsis thaliana
AT1G15820 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5436462-5446461 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370049 5261 Brassicaceae View MSA
123841189 5264 Brassicales-Malvales View MSA
124345557 5266 SBM View MSA
124238758 5268 Malvidae View MSA
124068665 5270 Rosid View MSA
123745282 5271 Pentapetalae View MSA
122788201 5272 Eudicot View MSA
122042531 5273 Angiosperm View MSA
121350849 5274 Embryophyte View MSA
123381903 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 767.49     High  
cufflinks 6.414        
cufflinks 1640.438     High  
cufflinks 8.858        
cufflinks 1817.48     High High
cufflinks 4.743       Low

0 Strain