Gene : AT1G11780 A. thaliana TAIR10
Defline:  (1 of 1) 1.14.11.33//4.2.99.18 - DNA oxidative demethylase / Alkylated DNA repair protein // DNA-(apurinic or apyrimidinic site) lyase / Phage-T4 UV endonuclease Genomic Order:  1157
Name:  ? AT1G11780 Secondary Identifier:  ? PAC:19653694
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G11780 0.5kb upstream 0.5kb upstream 2857 true Chr1: 3976839-3979695 Arabidopsis thaliana
AT1G11780 0.5kb upstream 0.5kb upstream 500 false Chr1: 3979196-3979695 Arabidopsis thaliana
AT1G11780 0.5kb downstream 0.5kb downstream 2857 true Chr1: 3976339-3979195 Arabidopsis thaliana
AT1G11780 0.5kb downstream 0.5kb downstream 500 false Chr1: 3976339-3976838 Arabidopsis thaliana
AT1G11780 1.0kb upstream 1.0kb upstream 3357 true Chr1: 3976839-3980195 Arabidopsis thaliana
AT1G11780 1.0kb upstream 1.0kb upstream 1000 false Chr1: 3979196-3980195 Arabidopsis thaliana
AT1G11780 1.0kb downstream 1.0kb downstream 3357 true Chr1: 3975839-3979195 Arabidopsis thaliana
AT1G11780 1.0kb downstream 1.0kb downstream 1000 false Chr1: 3975839-3976838 Arabidopsis thaliana
AT1G11780 2.0kb upstream 2.0kb upstream 4357 true Chr1: 3976839-3981195 Arabidopsis thaliana
AT1G11780 2.0kb upstream 2.0kb upstream 2000 false Chr1: 3979196-3981195 Arabidopsis thaliana
AT1G11780 2.0kb downstream 2.0kb downstream 4357 true Chr1: 3974839-3979195 Arabidopsis thaliana
AT1G11780 2.0kb downstream 2.0kb downstream 2000 false Chr1: 3974839-3976838 Arabidopsis thaliana
AT1G11780 5.0kb upstream 5.0kb upstream 7357 true Chr1: 3976839-3984195 Arabidopsis thaliana
AT1G11780 5.0kb upstream 5.0kb upstream 5000 false Chr1: 3979196-3984195 Arabidopsis thaliana
AT1G11780 5.0kb downstream 5.0kb downstream 7357 true Chr1: 3971839-3979195 Arabidopsis thaliana
AT1G11780 5.0kb downstream 5.0kb downstream 5000 false Chr1: 3971839-3976838 Arabidopsis thaliana
AT1G11780 10.0kb upstream 10.0kb upstream 12357 true Chr1: 3976839-3989195 Arabidopsis thaliana
AT1G11780 10.0kb upstream 10.0kb upstream 10000 false Chr1: 3979196-3989195 Arabidopsis thaliana
AT1G11780 10.0kb downstream 10.0kb downstream 12357 true Chr1: 3966839-3979195 Arabidopsis thaliana
AT1G11780 10.0kb downstream 10.0kb downstream 10000 false Chr1: 3966839-3976838 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372044 5261 Brassicaceae View MSA
123831243 5264 Brassicales-Malvales View MSA
124343538 5266 SBM View MSA
124237124 5268 Malvidae View MSA
124069027 5270 Rosid View MSA
123737272 5271 Pentapetalae View MSA
122785941 5272 Eudicot View MSA
122044879 5273 Angiosperm View MSA
121344923 5274 Embryophyte View MSA
123425704 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.985        
cufflinks 7.098        
cufflinks 3.65       Low
cufflinks 7.025        
cufflinks 3.216       Low
cufflinks 7.492        

0 Strain