Gene : AT1G25682 A. thaliana TAIR10
Defline:  (1 of 1) K13115 - coiled-coil domain-containing protein 130 (CCDC130) Genomic Order:  2570
Name:  ? AT1G25682 Secondary Identifier:  ? PAC:19651304
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G25682 0.5kb upstream 0.5kb upstream 2862 true Chr1: 9002285-9005146 Arabidopsis thaliana
AT1G25682 0.5kb upstream 0.5kb upstream 500 false Chr1: 9004647-9005146 Arabidopsis thaliana
AT1G25682 0.5kb downstream 0.5kb downstream 2862 true Chr1: 9001785-9004646 Arabidopsis thaliana
AT1G25682 0.5kb downstream 0.5kb downstream 500 false Chr1: 9001785-9002284 Arabidopsis thaliana
AT1G25682 1.0kb upstream 1.0kb upstream 3362 true Chr1: 9002285-9005646 Arabidopsis thaliana
AT1G25682 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9004647-9005646 Arabidopsis thaliana
AT1G25682 1.0kb downstream 1.0kb downstream 3362 true Chr1: 9001285-9004646 Arabidopsis thaliana
AT1G25682 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9001285-9002284 Arabidopsis thaliana
AT1G25682 2.0kb upstream 2.0kb upstream 4362 true Chr1: 9002285-9006646 Arabidopsis thaliana
AT1G25682 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9004647-9006646 Arabidopsis thaliana
AT1G25682 2.0kb downstream 2.0kb downstream 4362 true Chr1: 9000285-9004646 Arabidopsis thaliana
AT1G25682 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9000285-9002284 Arabidopsis thaliana
AT1G25682 5.0kb upstream 5.0kb upstream 7362 true Chr1: 9002285-9009646 Arabidopsis thaliana
AT1G25682 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9004647-9009646 Arabidopsis thaliana
AT1G25682 5.0kb downstream 5.0kb downstream 7362 true Chr1: 8997285-9004646 Arabidopsis thaliana
AT1G25682 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8997285-9002284 Arabidopsis thaliana
AT1G25682 10.0kb upstream 10.0kb upstream 12362 true Chr1: 9002285-9014646 Arabidopsis thaliana
AT1G25682 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9004647-9014646 Arabidopsis thaliana
AT1G25682 10.0kb downstream 10.0kb downstream 12362 true Chr1: 8992285-9004646 Arabidopsis thaliana
AT1G25682 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8992285-9002284 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374012 5261 Brassicaceae View MSA
123833534 5264 Brassicales-Malvales View MSA
124337383 5266 SBM View MSA
124247506 5268 Malvidae View MSA
124066479 5270 Rosid View MSA
123741019 5271 Pentapetalae View MSA
122788586 5272 Eudicot View MSA
122043974 5273 Angiosperm View MSA
121347159 5274 Embryophyte View MSA
123428869 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.324        
cufflinks 29.651     High High
cufflinks 10.885       Low
cufflinks 23.739        
cufflinks 11.855        
cufflinks 23.263        

0 Strain