Gene : AT1G22490 A. thaliana TAIR10
Defline:  (1 of 3) PTHR11969:SF22 - TRANSCRIPTION FACTOR BHLH71-RELATED Genomic Order:  2274
Name:  ? AT1G22490 Secondary Identifier:  ? PAC:19653616
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G22490 0.5kb upstream 0.5kb upstream 2842 true Chr1: 7938251-7941092 Arabidopsis thaliana
AT1G22490 0.5kb upstream 0.5kb upstream 500 false Chr1: 7940593-7941092 Arabidopsis thaliana
AT1G22490 0.5kb downstream 0.5kb downstream 2842 true Chr1: 7937751-7940592 Arabidopsis thaliana
AT1G22490 0.5kb downstream 0.5kb downstream 500 false Chr1: 7937751-7938250 Arabidopsis thaliana
AT1G22490 1.0kb upstream 1.0kb upstream 3342 true Chr1: 7938251-7941592 Arabidopsis thaliana
AT1G22490 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7940593-7941592 Arabidopsis thaliana
AT1G22490 1.0kb downstream 1.0kb downstream 3342 true Chr1: 7937251-7940592 Arabidopsis thaliana
AT1G22490 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7937251-7938250 Arabidopsis thaliana
AT1G22490 2.0kb upstream 2.0kb upstream 4342 true Chr1: 7938251-7942592 Arabidopsis thaliana
AT1G22490 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7940593-7942592 Arabidopsis thaliana
AT1G22490 2.0kb downstream 2.0kb downstream 4342 true Chr1: 7936251-7940592 Arabidopsis thaliana
AT1G22490 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7936251-7938250 Arabidopsis thaliana
AT1G22490 5.0kb upstream 5.0kb upstream 7342 true Chr1: 7938251-7945592 Arabidopsis thaliana
AT1G22490 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7940593-7945592 Arabidopsis thaliana
AT1G22490 5.0kb downstream 5.0kb downstream 7342 true Chr1: 7933251-7940592 Arabidopsis thaliana
AT1G22490 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7933251-7938250 Arabidopsis thaliana
AT1G22490 10.0kb upstream 10.0kb upstream 12342 true Chr1: 7938251-7950592 Arabidopsis thaliana
AT1G22490 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7940593-7950592 Arabidopsis thaliana
AT1G22490 10.0kb downstream 10.0kb downstream 12342 true Chr1: 7928251-7940592 Arabidopsis thaliana
AT1G22490 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7928251-7938250 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366452 5261 Brassicaceae View MSA
123836851 5264 Brassicales-Malvales View MSA
124345598 5266 SBM View MSA
124253153 5268 Malvidae View MSA
124070189 5270 Rosid View MSA
123749285 5271 Pentapetalae View MSA
122794835 5272 Eudicot View MSA
122051154 5273 Angiosperm View MSA
121350598 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.81       Low
cufflinks 11.176        
cufflinks 1.902        
cufflinks 9.031        
cufflinks 2.069        
cufflinks 10.589        

0 Strain