Gene : AT1G20990 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13871//PTHR13871:SF43 - THIOREDOXIN // CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN Genomic Order:  2118
Name:  ? AT1G20990 Secondary Identifier:  ? PAC:19653091
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7039 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G20990 0.5kb upstream 0.5kb upstream 1923 true Chr1: 7330524-7332446 Arabidopsis thaliana
AT1G20990 0.5kb upstream 0.5kb upstream 500 false Chr1: 7331947-7332446 Arabidopsis thaliana
AT1G20990 0.5kb downstream 0.5kb downstream 1923 true Chr1: 7330024-7331946 Arabidopsis thaliana
AT1G20990 0.5kb downstream 0.5kb downstream 500 false Chr1: 7330024-7330523 Arabidopsis thaliana
AT1G20990 1.0kb upstream 1.0kb upstream 2423 true Chr1: 7330524-7332946 Arabidopsis thaliana
AT1G20990 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7331947-7332946 Arabidopsis thaliana
AT1G20990 1.0kb downstream 1.0kb downstream 2423 true Chr1: 7329524-7331946 Arabidopsis thaliana
AT1G20990 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7329524-7330523 Arabidopsis thaliana
AT1G20990 2.0kb upstream 2.0kb upstream 3423 true Chr1: 7330524-7333946 Arabidopsis thaliana
AT1G20990 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7331947-7333946 Arabidopsis thaliana
AT1G20990 2.0kb downstream 2.0kb downstream 3423 true Chr1: 7328524-7331946 Arabidopsis thaliana
AT1G20990 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7328524-7330523 Arabidopsis thaliana
AT1G20990 5.0kb upstream 5.0kb upstream 6423 true Chr1: 7330524-7336946 Arabidopsis thaliana
AT1G20990 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7331947-7336946 Arabidopsis thaliana
AT1G20990 5.0kb downstream 5.0kb downstream 6423 true Chr1: 7325524-7331946 Arabidopsis thaliana
AT1G20990 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7325524-7330523 Arabidopsis thaliana
AT1G20990 10.0kb upstream 10.0kb upstream 11423 true Chr1: 7330524-7341946 Arabidopsis thaliana
AT1G20990 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7331947-7341946 Arabidopsis thaliana
AT1G20990 10.0kb downstream 10.0kb downstream 11423 true Chr1: 7320524-7331946 Arabidopsis thaliana
AT1G20990 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7320524-7330523 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368030 5261 Brassicaceae View MSA
123840186 5264 Brassicales-Malvales View MSA
124340169 5266 SBM View MSA
124239800 5268 Malvidae View MSA
124061388 5270 Rosid View MSA
123737887 5271 Pentapetalae View MSA
122796546 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.274     Low  
cufflinks 16.781        
cufflinks 0.309        
cufflinks 12.637        
cufflinks 0.365        
cufflinks 13.619        

0 Strain